Hb_002687_150

Information

Type -
Description -
Location Contig2687: 168882-170384
Sequence    

Annotation

kegg
ID bvg:104894372
description uncharacterized LOC104894372
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A5AZ10
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28076: 169411-169803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_150 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_006040_070 0.1649622976 - - orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
3 Hb_001008_160 0.1692357857 - - -
4 Hb_147873_010 0.1803924452 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
5 Hb_000333_120 0.1869781248 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
6 Hb_008253_040 0.1890839596 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
7 Hb_000856_410 0.2008319269 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_136660_010 0.2103420521 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_015882_020 0.2127204287 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
10 Hb_002995_030 0.2162579626 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005833_020 0.2171325582 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
12 Hb_126103_010 0.2171563291 - - Phosphoprotein phosphatase [Theobroma cacao]
13 Hb_001227_040 0.2180825465 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
14 Hb_001345_030 0.2195596446 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
15 Hb_027402_100 0.2226812663 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
16 Hb_000465_100 0.2245767117 - - catalytic, putative [Ricinus communis]
17 Hb_001230_020 0.2245931296 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
18 Hb_004030_070 0.2259093239 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
19 Hb_108055_010 0.226253435 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_000705_130 0.2272692756 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002687_150 Hb_002687_150 Hb_006040_070 Hb_006040_070 Hb_002687_150--Hb_006040_070 Hb_001008_160 Hb_001008_160 Hb_002687_150--Hb_001008_160 Hb_147873_010 Hb_147873_010 Hb_002687_150--Hb_147873_010 Hb_000333_120 Hb_000333_120 Hb_002687_150--Hb_000333_120 Hb_008253_040 Hb_008253_040 Hb_002687_150--Hb_008253_040 Hb_000856_410 Hb_000856_410 Hb_002687_150--Hb_000856_410 Hb_027402_100 Hb_027402_100 Hb_006040_070--Hb_027402_100 Hb_172676_010 Hb_172676_010 Hb_006040_070--Hb_172676_010 Hb_002910_010 Hb_002910_010 Hb_006040_070--Hb_002910_010 Hb_001345_030 Hb_001345_030 Hb_006040_070--Hb_001345_030 Hb_015882_020 Hb_015882_020 Hb_006040_070--Hb_015882_020 Hb_010620_020 Hb_010620_020 Hb_001008_160--Hb_010620_020 Hb_001008_160--Hb_000333_120 Hb_000465_380 Hb_000465_380 Hb_001008_160--Hb_000465_380 Hb_000029_180 Hb_000029_180 Hb_001008_160--Hb_000029_180 Hb_011925_010 Hb_011925_010 Hb_001008_160--Hb_011925_010 Hb_136660_010 Hb_136660_010 Hb_147873_010--Hb_136660_010 Hb_126103_010 Hb_126103_010 Hb_147873_010--Hb_126103_010 Hb_060909_010 Hb_060909_010 Hb_147873_010--Hb_060909_010 Hb_002078_090 Hb_002078_090 Hb_147873_010--Hb_002078_090 Hb_002475_130 Hb_002475_130 Hb_147873_010--Hb_002475_130 Hb_000233_100 Hb_000233_100 Hb_147873_010--Hb_000233_100 Hb_108055_010 Hb_108055_010 Hb_000333_120--Hb_108055_010 Hb_000705_130 Hb_000705_130 Hb_000333_120--Hb_000705_130 Hb_000333_120--Hb_015882_020 Hb_000333_120--Hb_000465_380 Hb_010962_030 Hb_010962_030 Hb_000333_120--Hb_010962_030 Hb_010921_060 Hb_010921_060 Hb_000333_120--Hb_010921_060 Hb_008253_040--Hb_000856_410 Hb_004166_010 Hb_004166_010 Hb_008253_040--Hb_004166_010 Hb_000172_080 Hb_000172_080 Hb_008253_040--Hb_000172_080 Hb_004030_070 Hb_004030_070 Hb_008253_040--Hb_004030_070 Hb_001863_450 Hb_001863_450 Hb_008253_040--Hb_001863_450 Hb_008253_040--Hb_001345_030 Hb_000856_410--Hb_000172_080 Hb_000856_410--Hb_004030_070 Hb_072276_010 Hb_072276_010 Hb_000856_410--Hb_072276_010 Hb_078901_010 Hb_078901_010 Hb_000856_410--Hb_078901_010 Hb_000856_410--Hb_004166_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0366088 1.44913 0.266641 0.0583478 0.0183527 0.0482721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.122232 0.184582 0.407902

CAGE analysis