Hb_005273_020

Information

Type -
Description -
Location Contig5273: 23080-24824
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005273_020 0.0 - - -
2 Hb_100105_010 0.2273764448 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
3 Hb_089140_120 0.2322956094 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
4 Hb_003902_060 0.2373744475 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
5 Hb_001711_010 0.2392263677 - - -
6 Hb_003891_070 0.2452144695 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
7 Hb_008232_030 0.2475574995 - - -
8 Hb_001195_120 0.2488347153 - - oxidoreductase, putative [Ricinus communis]
9 Hb_089140_010 0.2496746891 - - -
10 Hb_188996_010 0.2536243834 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004611_030 0.2537545914 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
12 Hb_000086_700 0.256540072 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
13 Hb_185516_010 0.2570495027 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_000438_090 0.2581764859 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
15 Hb_001722_050 0.2606874081 - - calcium binding family protein [Populus trichocarpa]
16 Hb_001277_190 0.2623002313 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
17 Hb_005539_340 0.2630126395 - - PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
18 Hb_000181_290 0.2632657496 - - hypothetical protein POPTR_0001s41000g [Populus trichocarpa]
19 Hb_010053_040 0.26434604 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
20 Hb_007083_010 0.2648566857 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]

Gene co-expression network

sample Hb_005273_020 Hb_005273_020 Hb_100105_010 Hb_100105_010 Hb_005273_020--Hb_100105_010 Hb_089140_120 Hb_089140_120 Hb_005273_020--Hb_089140_120 Hb_003902_060 Hb_003902_060 Hb_005273_020--Hb_003902_060 Hb_001711_010 Hb_001711_010 Hb_005273_020--Hb_001711_010 Hb_003891_070 Hb_003891_070 Hb_005273_020--Hb_003891_070 Hb_008232_030 Hb_008232_030 Hb_005273_020--Hb_008232_030 Hb_000302_130 Hb_000302_130 Hb_100105_010--Hb_000302_130 Hb_008667_040 Hb_008667_040 Hb_100105_010--Hb_008667_040 Hb_000264_290 Hb_000264_290 Hb_100105_010--Hb_000264_290 Hb_000152_230 Hb_000152_230 Hb_100105_010--Hb_000152_230 Hb_188996_010 Hb_188996_010 Hb_100105_010--Hb_188996_010 Hb_100105_010--Hb_003902_060 Hb_010789_020 Hb_010789_020 Hb_089140_120--Hb_010789_020 Hb_000438_090 Hb_000438_090 Hb_089140_120--Hb_000438_090 Hb_001486_020 Hb_001486_020 Hb_089140_120--Hb_001486_020 Hb_000743_030 Hb_000743_030 Hb_089140_120--Hb_000743_030 Hb_001911_040 Hb_001911_040 Hb_089140_120--Hb_001911_040 Hb_010053_040 Hb_010053_040 Hb_089140_120--Hb_010053_040 Hb_078568_010 Hb_078568_010 Hb_003902_060--Hb_078568_010 Hb_000731_230 Hb_000731_230 Hb_003902_060--Hb_000731_230 Hb_075230_010 Hb_075230_010 Hb_003902_060--Hb_075230_010 Hb_000099_090 Hb_000099_090 Hb_003902_060--Hb_000099_090 Hb_000045_280 Hb_000045_280 Hb_003902_060--Hb_000045_280 Hb_000011_050 Hb_000011_050 Hb_001711_010--Hb_000011_050 Hb_004899_330 Hb_004899_330 Hb_001711_010--Hb_004899_330 Hb_001898_150 Hb_001898_150 Hb_001711_010--Hb_001898_150 Hb_011915_040 Hb_011915_040 Hb_001711_010--Hb_011915_040 Hb_171718_020 Hb_171718_020 Hb_001711_010--Hb_171718_020 Hb_003305_030 Hb_003305_030 Hb_001711_010--Hb_003305_030 Hb_116349_060 Hb_116349_060 Hb_003891_070--Hb_116349_060 Hb_003891_070--Hb_010053_040 Hb_001269_200 Hb_001269_200 Hb_003891_070--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_003891_070--Hb_001807_010 Hb_002928_010 Hb_002928_010 Hb_003891_070--Hb_002928_010 Hb_000735_050 Hb_000735_050 Hb_003891_070--Hb_000735_050 Hb_001722_050 Hb_001722_050 Hb_008232_030--Hb_001722_050 Hb_002615_070 Hb_002615_070 Hb_008232_030--Hb_002615_070 Hb_008232_030--Hb_001486_020 Hb_008232_030--Hb_089140_120 Hb_008725_060 Hb_008725_060 Hb_008232_030--Hb_008725_060 Hb_001221_220 Hb_001221_220 Hb_008232_030--Hb_001221_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43243 0.632776 1.09702 0.943211 0.241087 0.132274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.239312 0.470086 0.16148 0.155391 0

CAGE analysis