Hb_008232_030

Information

Type -
Description -
Location Contig8232: 23454-23686
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003700
description gata transcription factor 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59669: 6902-23961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008232_030 0.0 - - -
2 Hb_001722_050 0.1427194447 - - calcium binding family protein [Populus trichocarpa]
3 Hb_002615_070 0.1640938139 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
4 Hb_001486_020 0.1678752599 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
5 Hb_089140_120 0.1686128944 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
6 Hb_008725_060 0.1692667551 - - Protein COBRA precursor, putative [Ricinus communis]
7 Hb_001221_220 0.1703282714 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
8 Hb_000395_040 0.1730030362 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
9 Hb_000805_210 0.1820987673 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
10 Hb_000622_130 0.1840425128 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
11 Hb_005535_080 0.1848814815 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
12 Hb_102291_010 0.1907544507 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
13 Hb_001191_080 0.1938631547 - - protein with unknown function [Ricinus communis]
14 Hb_004450_050 0.1940999067 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
15 Hb_005867_090 0.1958011761 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
16 Hb_000538_240 0.1959337358 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
17 Hb_005381_020 0.1972568042 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
18 Hb_009557_030 0.1973140348 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]
19 Hb_001405_110 0.1984509116 - - glutamine synthetase [Hevea brasiliensis]
20 Hb_016467_010 0.1989451938 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]

Gene co-expression network

sample Hb_008232_030 Hb_008232_030 Hb_001722_050 Hb_001722_050 Hb_008232_030--Hb_001722_050 Hb_002615_070 Hb_002615_070 Hb_008232_030--Hb_002615_070 Hb_001486_020 Hb_001486_020 Hb_008232_030--Hb_001486_020 Hb_089140_120 Hb_089140_120 Hb_008232_030--Hb_089140_120 Hb_008725_060 Hb_008725_060 Hb_008232_030--Hb_008725_060 Hb_001221_220 Hb_001221_220 Hb_008232_030--Hb_001221_220 Hb_158144_010 Hb_158144_010 Hb_001722_050--Hb_158144_010 Hb_000538_240 Hb_000538_240 Hb_001722_050--Hb_000538_240 Hb_002232_040 Hb_002232_040 Hb_001722_050--Hb_002232_040 Hb_001722_050--Hb_001221_220 Hb_000743_030 Hb_000743_030 Hb_001722_050--Hb_000743_030 Hb_000805_210 Hb_000805_210 Hb_002615_070--Hb_000805_210 Hb_007919_110 Hb_007919_110 Hb_002615_070--Hb_007919_110 Hb_000703_160 Hb_000703_160 Hb_002615_070--Hb_000703_160 Hb_003449_100 Hb_003449_100 Hb_002615_070--Hb_003449_100 Hb_000958_080 Hb_000958_080 Hb_002615_070--Hb_000958_080 Hb_005535_080 Hb_005535_080 Hb_002615_070--Hb_005535_080 Hb_001486_020--Hb_089140_120 Hb_001486_020--Hb_001221_220 Hb_102291_010 Hb_102291_010 Hb_001486_020--Hb_102291_010 Hb_009545_090 Hb_009545_090 Hb_001486_020--Hb_009545_090 Hb_001911_040 Hb_001911_040 Hb_001486_020--Hb_001911_040 Hb_000991_040 Hb_000991_040 Hb_001486_020--Hb_000991_040 Hb_010789_020 Hb_010789_020 Hb_089140_120--Hb_010789_020 Hb_000438_090 Hb_000438_090 Hb_089140_120--Hb_000438_090 Hb_089140_120--Hb_000743_030 Hb_089140_120--Hb_001911_040 Hb_010053_040 Hb_010053_040 Hb_089140_120--Hb_010053_040 Hb_000009_220 Hb_000009_220 Hb_008725_060--Hb_000009_220 Hb_003746_030 Hb_003746_030 Hb_008725_060--Hb_003746_030 Hb_000369_010 Hb_000369_010 Hb_008725_060--Hb_000369_010 Hb_008725_060--Hb_002615_070 Hb_001950_070 Hb_001950_070 Hb_008725_060--Hb_001950_070 Hb_014231_020 Hb_014231_020 Hb_008725_060--Hb_014231_020 Hb_005867_090 Hb_005867_090 Hb_001221_220--Hb_005867_090 Hb_001221_220--Hb_000538_240 Hb_007943_050 Hb_007943_050 Hb_001221_220--Hb_007943_050 Hb_156635_010 Hb_156635_010 Hb_001221_220--Hb_156635_010 Hb_000733_200 Hb_000733_200 Hb_001221_220--Hb_000733_200 Hb_003567_030 Hb_003567_030 Hb_001221_220--Hb_003567_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
565.626 547.779 791.986 1142.88 246.801 317.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.4462 577.487 314.815 98.5939 154.289

CAGE analysis