Hb_001722_050

Information

Type -
Description -
Location Contig1722: 92269-95357
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11820g
description POPTRDRAFT_726819; calcium binding family protein
nr
ID XP_002314792.1
description calcium binding family protein [Populus trichocarpa]
swissprot
ID Q9CAB7
description Probable peroxygenase 4 OS=Arabidopsis thaliana GN=PXG4 PE=1 SV=1
trembl
ID B9HW27
description Calcium binding family protein OS=Populus trichocarpa GN=POPTR_0010s11820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16228: 91575-95293 , PASA_asmbl_16229: 93357-93646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001722_050 0.0 - - calcium binding family protein [Populus trichocarpa]
2 Hb_008232_030 0.1427194447 - - -
3 Hb_158144_010 0.152689478 - - -
4 Hb_000538_240 0.1602994461 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
5 Hb_002232_040 0.1632160831 - - -
6 Hb_001221_220 0.1666851095 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
7 Hb_000743_030 0.1679816737 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
8 Hb_001405_110 0.1697526651 - - glutamine synthetase [Hevea brasiliensis]
9 Hb_006570_150 0.1752110021 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
10 Hb_000422_030 0.1778382825 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
11 Hb_006132_110 0.1794668677 - - conserved hypothetical protein [Ricinus communis]
12 Hb_155215_020 0.1801065724 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
13 Hb_009557_030 0.1807034956 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]
14 Hb_089140_120 0.1817968504 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
15 Hb_016467_010 0.1823494261 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
16 Hb_156635_010 0.1831199333 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
17 Hb_001911_040 0.1831757285 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
18 Hb_171900_060 0.1860313833 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
19 Hb_004312_010 0.1864241908 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
20 Hb_003567_030 0.1866819324 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001722_050 Hb_001722_050 Hb_008232_030 Hb_008232_030 Hb_001722_050--Hb_008232_030 Hb_158144_010 Hb_158144_010 Hb_001722_050--Hb_158144_010 Hb_000538_240 Hb_000538_240 Hb_001722_050--Hb_000538_240 Hb_002232_040 Hb_002232_040 Hb_001722_050--Hb_002232_040 Hb_001221_220 Hb_001221_220 Hb_001722_050--Hb_001221_220 Hb_000743_030 Hb_000743_030 Hb_001722_050--Hb_000743_030 Hb_002615_070 Hb_002615_070 Hb_008232_030--Hb_002615_070 Hb_001486_020 Hb_001486_020 Hb_008232_030--Hb_001486_020 Hb_089140_120 Hb_089140_120 Hb_008232_030--Hb_089140_120 Hb_008725_060 Hb_008725_060 Hb_008232_030--Hb_008725_060 Hb_008232_030--Hb_001221_220 Hb_000422_030 Hb_000422_030 Hb_158144_010--Hb_000422_030 Hb_000975_220 Hb_000975_220 Hb_158144_010--Hb_000975_220 Hb_001269_640 Hb_001269_640 Hb_158144_010--Hb_001269_640 Hb_002284_150 Hb_002284_150 Hb_158144_010--Hb_002284_150 Hb_002092_120 Hb_002092_120 Hb_158144_010--Hb_002092_120 Hb_006570_150 Hb_006570_150 Hb_158144_010--Hb_006570_150 Hb_005463_050 Hb_005463_050 Hb_000538_240--Hb_005463_050 Hb_011671_480 Hb_011671_480 Hb_000538_240--Hb_011671_480 Hb_000538_240--Hb_002232_040 Hb_002631_280 Hb_002631_280 Hb_000538_240--Hb_002631_280 Hb_000538_240--Hb_001221_220 Hb_001911_040 Hb_001911_040 Hb_000538_240--Hb_001911_040 Hb_000096_170 Hb_000096_170 Hb_002232_040--Hb_000096_170 Hb_156635_010 Hb_156635_010 Hb_002232_040--Hb_156635_010 Hb_124953_020 Hb_124953_020 Hb_002232_040--Hb_124953_020 Hb_002105_100 Hb_002105_100 Hb_002232_040--Hb_002105_100 Hb_001016_150 Hb_001016_150 Hb_002232_040--Hb_001016_150 Hb_005867_090 Hb_005867_090 Hb_001221_220--Hb_005867_090 Hb_007943_050 Hb_007943_050 Hb_001221_220--Hb_007943_050 Hb_001221_220--Hb_156635_010 Hb_000733_200 Hb_000733_200 Hb_001221_220--Hb_000733_200 Hb_003567_030 Hb_003567_030 Hb_001221_220--Hb_003567_030 Hb_000743_030--Hb_001911_040 Hb_000743_030--Hb_006570_150 Hb_000743_030--Hb_001221_220 Hb_000743_030--Hb_000538_240 Hb_000743_030--Hb_002631_280 Hb_000743_030--Hb_000422_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.8466 39.9289 58.1591 75.1515 14.6935 31.6834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0506 82.6873 17.0771 7.83533 16.689

CAGE analysis