Hb_000637_080

Information

Type -
Description -
Location Contig637: 108507-109334
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06400g
description protease inhibitor/seed storage/lipid transfer family protein
nr
ID XP_012093051.1
description PREDICTED: protein YLS3 [Jatropha curcas]
swissprot
ID O64864
description Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1
trembl
ID A0A067JKV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05878 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000637_080 0.0 - - PREDICTED: protein YLS3 [Jatropha curcas]
2 Hb_003209_190 0.1801782279 - - hypothetical protein POPTR_0010s16770g [Populus trichocarpa]
3 Hb_000431_090 0.1829355407 - - hypothetical protein POPTR_0017s14020g [Populus trichocarpa]
4 Hb_000041_260 0.2176916938 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
5 Hb_002218_050 0.2184947523 - - SSXT family protein isoform 2, partial [Theobroma cacao]
6 Hb_000261_530 0.2231597087 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
7 Hb_003541_010 0.2264025022 - - transcription factor, putative [Ricinus communis]
8 Hb_005839_080 0.2298000474 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
9 Hb_011609_130 0.2353479876 - - -
10 Hb_001241_020 0.2376812067 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
11 Hb_007632_200 0.2426205712 - - hypothetical protein L484_018221 [Morus notabilis]
12 Hb_005162_120 0.2447106448 - - ferric reductase oxidase [Manihot esculenta]
13 Hb_010288_050 0.2447725979 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
14 Hb_012084_010 0.2451375703 - - cold regulated protein [Manihot esculenta]
15 Hb_000465_110 0.247168012 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
16 Hb_002693_040 0.2476743456 - - hypersensitive-induced response protein [Carica papaya]
17 Hb_003964_050 0.2478288007 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
18 Hb_001606_040 0.2483589837 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
19 Hb_007225_010 0.2492032529 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
20 Hb_000152_580 0.2499490002 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000637_080 Hb_000637_080 Hb_003209_190 Hb_003209_190 Hb_000637_080--Hb_003209_190 Hb_000431_090 Hb_000431_090 Hb_000637_080--Hb_000431_090 Hb_000041_260 Hb_000041_260 Hb_000637_080--Hb_000041_260 Hb_002218_050 Hb_002218_050 Hb_000637_080--Hb_002218_050 Hb_000261_530 Hb_000261_530 Hb_000637_080--Hb_000261_530 Hb_003541_010 Hb_003541_010 Hb_000637_080--Hb_003541_010 Hb_002918_170 Hb_002918_170 Hb_003209_190--Hb_002918_170 Hb_003077_010 Hb_003077_010 Hb_003209_190--Hb_003077_010 Hb_003387_010 Hb_003387_010 Hb_003209_190--Hb_003387_010 Hb_000110_240 Hb_000110_240 Hb_003209_190--Hb_000110_240 Hb_012084_010 Hb_012084_010 Hb_003209_190--Hb_012084_010 Hb_001218_060 Hb_001218_060 Hb_003209_190--Hb_001218_060 Hb_003964_050 Hb_003964_050 Hb_000431_090--Hb_003964_050 Hb_000731_030 Hb_000731_030 Hb_000431_090--Hb_000731_030 Hb_000505_030 Hb_000505_030 Hb_000431_090--Hb_000505_030 Hb_078954_020 Hb_078954_020 Hb_000431_090--Hb_078954_020 Hb_012633_010 Hb_012633_010 Hb_000431_090--Hb_012633_010 Hb_001579_190 Hb_001579_190 Hb_000041_260--Hb_001579_190 Hb_004218_050 Hb_004218_050 Hb_000041_260--Hb_004218_050 Hb_001934_040 Hb_001934_040 Hb_000041_260--Hb_001934_040 Hb_010683_070 Hb_010683_070 Hb_000041_260--Hb_010683_070 Hb_006615_220 Hb_006615_220 Hb_000041_260--Hb_006615_220 Hb_000343_010 Hb_000343_010 Hb_000041_260--Hb_000343_010 Hb_000388_040 Hb_000388_040 Hb_002218_050--Hb_000388_040 Hb_114292_010 Hb_114292_010 Hb_002218_050--Hb_114292_010 Hb_001040_050 Hb_001040_050 Hb_002218_050--Hb_001040_050 Hb_005162_120 Hb_005162_120 Hb_002218_050--Hb_005162_120 Hb_001143_200 Hb_001143_200 Hb_002218_050--Hb_001143_200 Hb_000115_190 Hb_000115_190 Hb_002218_050--Hb_000115_190 Hb_002639_170 Hb_002639_170 Hb_000261_530--Hb_002639_170 Hb_010288_050 Hb_010288_050 Hb_000261_530--Hb_010288_050 Hb_006788_090 Hb_006788_090 Hb_000261_530--Hb_006788_090 Hb_000261_530--Hb_005162_120 Hb_011609_130 Hb_011609_130 Hb_000261_530--Hb_011609_130 Hb_002799_120 Hb_002799_120 Hb_000261_530--Hb_002799_120 Hb_000465_110 Hb_000465_110 Hb_003541_010--Hb_000465_110 Hb_185494_010 Hb_185494_010 Hb_003541_010--Hb_185494_010 Hb_003541_010--Hb_003209_190 Hb_019762_030 Hb_019762_030 Hb_003541_010--Hb_019762_030 Hb_000853_340 Hb_000853_340 Hb_003541_010--Hb_000853_340 Hb_063584_010 Hb_063584_010 Hb_003541_010--Hb_063584_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0379269 1.51624 0.0880605 0.125916 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.08158 0 0.0669867 0.157401

CAGE analysis