Hb_000431_090

Information

Type -
Description -
Location Contig431: 118941-119981
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14020g
description hypothetical protein
nr
ID XP_006373464.1
description hypothetical protein POPTR_0017s14020g [Populus trichocarpa]
swissprot
ID Q9FGW0
description Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FLA20 PE=3 SV=1
trembl
ID B9N201
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s14020g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_090 0.0 - - hypothetical protein POPTR_0017s14020g [Populus trichocarpa]
2 Hb_000637_080 0.1829355407 - - PREDICTED: protein YLS3 [Jatropha curcas]
3 Hb_003964_050 0.1855942359 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
4 Hb_000731_030 0.1976666047 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_000505_030 0.2185458528 - - conserved hypothetical protein [Ricinus communis]
6 Hb_078954_020 0.2237314252 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
7 Hb_012633_010 0.2240754871 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
8 Hb_002218_050 0.225127871 - - SSXT family protein isoform 2, partial [Theobroma cacao]
9 Hb_000152_200 0.2256118441 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
10 Hb_004542_010 0.2261353391 - - Putative chloroplast RF19 [Medicago truncatula]
11 Hb_001433_120 0.2273168265 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
12 Hb_007157_050 0.2273961886 - - hypothetical protein RCOM_0711500 [Ricinus communis]
13 Hb_002447_060 0.2279534747 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
14 Hb_002079_100 0.2296831707 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
15 Hb_003549_060 0.2312955452 - - PREDICTED: importin subunit alpha-1a-like isoform X3 [Gossypium raimondii]
16 Hb_177533_010 0.231378835 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
17 Hb_002307_040 0.2318507201 - - DNA binding protein, putative [Ricinus communis]
18 Hb_004881_040 0.2321681949 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
19 Hb_008059_040 0.2341006654 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
20 Hb_001519_080 0.2342046326 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]

Gene co-expression network

sample Hb_000431_090 Hb_000431_090 Hb_000637_080 Hb_000637_080 Hb_000431_090--Hb_000637_080 Hb_003964_050 Hb_003964_050 Hb_000431_090--Hb_003964_050 Hb_000731_030 Hb_000731_030 Hb_000431_090--Hb_000731_030 Hb_000505_030 Hb_000505_030 Hb_000431_090--Hb_000505_030 Hb_078954_020 Hb_078954_020 Hb_000431_090--Hb_078954_020 Hb_012633_010 Hb_012633_010 Hb_000431_090--Hb_012633_010 Hb_003209_190 Hb_003209_190 Hb_000637_080--Hb_003209_190 Hb_000041_260 Hb_000041_260 Hb_000637_080--Hb_000041_260 Hb_002218_050 Hb_002218_050 Hb_000637_080--Hb_002218_050 Hb_000261_530 Hb_000261_530 Hb_000637_080--Hb_000261_530 Hb_003541_010 Hb_003541_010 Hb_000637_080--Hb_003541_010 Hb_012084_010 Hb_012084_010 Hb_003964_050--Hb_012084_010 Hb_008059_040 Hb_008059_040 Hb_003964_050--Hb_008059_040 Hb_003964_050--Hb_012633_010 Hb_005839_080 Hb_005839_080 Hb_003964_050--Hb_005839_080 Hb_003964_050--Hb_078954_020 Hb_103709_010 Hb_103709_010 Hb_003964_050--Hb_103709_010 Hb_000731_030--Hb_000505_030 Hb_002079_100 Hb_002079_100 Hb_000731_030--Hb_002079_100 Hb_000152_200 Hb_000152_200 Hb_000731_030--Hb_000152_200 Hb_006909_050 Hb_006909_050 Hb_000731_030--Hb_006909_050 Hb_001519_080 Hb_001519_080 Hb_000731_030--Hb_001519_080 Hb_007558_060 Hb_007558_060 Hb_000731_030--Hb_007558_060 Hb_000505_030--Hb_002079_100 Hb_000505_030--Hb_007558_060 Hb_000505_030--Hb_000152_200 Hb_001680_060 Hb_001680_060 Hb_000505_030--Hb_001680_060 Hb_000505_030--Hb_001519_080 Hb_000282_010 Hb_000282_010 Hb_078954_020--Hb_000282_010 Hb_001218_060 Hb_001218_060 Hb_078954_020--Hb_001218_060 Hb_001123_340 Hb_001123_340 Hb_078954_020--Hb_001123_340 Hb_001926_010 Hb_001926_010 Hb_078954_020--Hb_001926_010 Hb_078954_020--Hb_000152_200 Hb_063584_010 Hb_063584_010 Hb_078954_020--Hb_063584_010 Hb_002447_060 Hb_002447_060 Hb_012633_010--Hb_002447_060 Hb_012633_010--Hb_002079_100 Hb_006519_020 Hb_006519_020 Hb_012633_010--Hb_006519_020 Hb_001040_050 Hb_001040_050 Hb_012633_010--Hb_001040_050 Hb_012633_010--Hb_000505_030 Hb_163140_010 Hb_163140_010 Hb_012633_010--Hb_163140_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0701711 1.65742 0.0538885 0.0987137 0.0185452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0379217 0 0 0.0777964

CAGE analysis