Hb_182782_010

Information

Type -
Description -
Location Contig182782: 439-894
Sequence    

Annotation

kegg
ID rcu:RCOM_0294440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002533004.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FIH2
description Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1
trembl
ID B9T435
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0294440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182782_010 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_007831_010 0.0938476838 - - PREDICTED: oligoribonuclease [Vitis vinifera]
3 Hb_000163_090 0.0952235968 - - gamma-tubulin complex component, putative [Ricinus communis]
4 Hb_001269_230 0.0974825543 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
5 Hb_000082_010 0.0976345403 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
6 Hb_000879_180 0.0977518861 - - XPA-binding protein, putative [Ricinus communis]
7 Hb_011282_060 0.0984867482 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
8 Hb_001188_060 0.099796967 - - -
9 Hb_012506_030 0.1027735429 - - AP-2 complex subunit alpha, putative [Ricinus communis]
10 Hb_001377_310 0.1035279308 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
11 Hb_001227_130 0.1039462108 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
12 Hb_000373_080 0.1055767544 - - PREDICTED: serine decarboxylase [Jatropha curcas]
13 Hb_000019_190 0.108418085 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
14 Hb_001518_080 0.1085039469 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
15 Hb_067130_010 0.1085706721 - - protein binding protein, putative [Ricinus communis]
16 Hb_002375_040 0.1087626227 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
17 Hb_000138_140 0.1090267235 - - hypothetical protein B456_012G1014001, partial [Gossypium raimondii]
18 Hb_003528_030 0.109810487 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
19 Hb_028872_090 0.1102367803 - - PREDICTED: urease [Jatropha curcas]
20 Hb_003943_050 0.1106025028 - - phosphoglucomutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_182782_010 Hb_182782_010 Hb_007831_010 Hb_007831_010 Hb_182782_010--Hb_007831_010 Hb_000163_090 Hb_000163_090 Hb_182782_010--Hb_000163_090 Hb_001269_230 Hb_001269_230 Hb_182782_010--Hb_001269_230 Hb_000082_010 Hb_000082_010 Hb_182782_010--Hb_000082_010 Hb_000879_180 Hb_000879_180 Hb_182782_010--Hb_000879_180 Hb_011282_060 Hb_011282_060 Hb_182782_010--Hb_011282_060 Hb_006153_070 Hb_006153_070 Hb_007831_010--Hb_006153_070 Hb_003430_050 Hb_003430_050 Hb_007831_010--Hb_003430_050 Hb_000207_150 Hb_000207_150 Hb_007831_010--Hb_000207_150 Hb_015807_050 Hb_015807_050 Hb_007831_010--Hb_015807_050 Hb_000107_230 Hb_000107_230 Hb_007831_010--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_007831_010--Hb_006588_170 Hb_001518_080 Hb_001518_080 Hb_000163_090--Hb_001518_080 Hb_001789_030 Hb_001789_030 Hb_000163_090--Hb_001789_030 Hb_001377_310 Hb_001377_310 Hb_000163_090--Hb_001377_310 Hb_008511_020 Hb_008511_020 Hb_000163_090--Hb_008511_020 Hb_000184_070 Hb_000184_070 Hb_000163_090--Hb_000184_070 Hb_030982_010 Hb_030982_010 Hb_000163_090--Hb_030982_010 Hb_001005_030 Hb_001005_030 Hb_001269_230--Hb_001005_030 Hb_001188_060 Hb_001188_060 Hb_001269_230--Hb_001188_060 Hb_004007_220 Hb_004007_220 Hb_001269_230--Hb_004007_220 Hb_109980_010 Hb_109980_010 Hb_001269_230--Hb_109980_010 Hb_000373_080 Hb_000373_080 Hb_001269_230--Hb_000373_080 Hb_001584_140 Hb_001584_140 Hb_001269_230--Hb_001584_140 Hb_016777_040 Hb_016777_040 Hb_000082_010--Hb_016777_040 Hb_002471_240 Hb_002471_240 Hb_000082_010--Hb_002471_240 Hb_000082_010--Hb_000373_080 Hb_006501_010 Hb_006501_010 Hb_000082_010--Hb_006501_010 Hb_028872_070 Hb_028872_070 Hb_000082_010--Hb_028872_070 Hb_008114_040 Hb_008114_040 Hb_000082_010--Hb_008114_040 Hb_000096_120 Hb_000096_120 Hb_000879_180--Hb_000096_120 Hb_000567_190 Hb_000567_190 Hb_000879_180--Hb_000567_190 Hb_010407_050 Hb_010407_050 Hb_000879_180--Hb_010407_050 Hb_000879_180--Hb_001377_310 Hb_012506_030 Hb_012506_030 Hb_000879_180--Hb_012506_030 Hb_004096_180 Hb_004096_180 Hb_000879_180--Hb_004096_180 Hb_052805_010 Hb_052805_010 Hb_011282_060--Hb_052805_010 Hb_006570_160 Hb_006570_160 Hb_011282_060--Hb_006570_160 Hb_003528_030 Hb_003528_030 Hb_011282_060--Hb_003528_030 Hb_001227_130 Hb_001227_130 Hb_011282_060--Hb_001227_130 Hb_001269_330 Hb_001269_330 Hb_011282_060--Hb_001269_330 Hb_010407_140 Hb_010407_140 Hb_011282_060--Hb_010407_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19238 1.82223 5.50927 3.96223 2.98722 5.03053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03887 2.34068 3.0666 3.62059 2.47729

CAGE analysis