Hb_133230_010

Information

Type -
Description -
Location Contig133230: 3-399
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G142400g
description hypothetical protein
nr
ID XP_010092779.1
description hypothetical protein L484_001846 [Morus notabilis]
swissprot
ID O80644
description ACT domain-containing protein ACR9 OS=Arabidopsis thaliana GN=ACR9 PE=2 SV=1
trembl
ID W9QRU2
description Uncharacterized protein OS=Morus notabilis GN=L484_001846 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing protein acr9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133230_010 0.0 - - hypothetical protein L484_001846 [Morus notabilis]
2 Hb_000579_060 0.1203725726 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
3 Hb_000154_050 0.1407634814 - - CMP-sialic acid transporter, putative [Ricinus communis]
4 Hb_006588_160 0.1463007621 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000818_100 0.148047336 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
6 Hb_002311_190 0.149657311 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
7 Hb_000503_020 0.1514735723 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
8 Hb_012353_040 0.152424108 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_000331_140 0.1538268903 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
10 Hb_009222_070 0.1546436112 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
11 Hb_008511_060 0.1551475151 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
12 Hb_006022_010 0.1557460187 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
13 Hb_001450_020 0.1562133774 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
14 Hb_003687_210 0.1564958788 - - PREDICTED: malate dehydrogenase [Populus euphratica]
15 Hb_015026_100 0.1567371567 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
16 Hb_000562_100 0.1568588332 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
17 Hb_002307_080 0.1572806652 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001053_080 0.157361632 - - OsCesA3 protein [Morus notabilis]
19 Hb_000630_030 0.1577083704 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
20 Hb_004013_030 0.1577632551 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]

Gene co-expression network

sample Hb_133230_010 Hb_133230_010 Hb_000579_060 Hb_000579_060 Hb_133230_010--Hb_000579_060 Hb_000154_050 Hb_000154_050 Hb_133230_010--Hb_000154_050 Hb_006588_160 Hb_006588_160 Hb_133230_010--Hb_006588_160 Hb_000818_100 Hb_000818_100 Hb_133230_010--Hb_000818_100 Hb_002311_190 Hb_002311_190 Hb_133230_010--Hb_002311_190 Hb_000503_020 Hb_000503_020 Hb_133230_010--Hb_000503_020 Hb_003687_210 Hb_003687_210 Hb_000579_060--Hb_003687_210 Hb_006831_070 Hb_006831_070 Hb_000579_060--Hb_006831_070 Hb_000608_350 Hb_000608_350 Hb_000579_060--Hb_000608_350 Hb_000056_160 Hb_000056_160 Hb_000579_060--Hb_000056_160 Hb_000599_170 Hb_000599_170 Hb_000579_060--Hb_000599_170 Hb_000579_070 Hb_000579_070 Hb_000579_060--Hb_000579_070 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_002837_040 Hb_002837_040 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_006588_160--Hb_004013_030 Hb_000001_090 Hb_000001_090 Hb_006588_160--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_006588_160--Hb_001053_080 Hb_006588_160--Hb_002837_040 Hb_001450_020 Hb_001450_020 Hb_006588_160--Hb_001450_020 Hb_029695_050 Hb_029695_050 Hb_000818_100--Hb_029695_050 Hb_009247_010 Hb_009247_010 Hb_000818_100--Hb_009247_010 Hb_009222_070 Hb_009222_070 Hb_000818_100--Hb_009222_070 Hb_000818_100--Hb_000503_020 Hb_000098_050 Hb_000098_050 Hb_000818_100--Hb_000098_050 Hb_000134_120 Hb_000134_120 Hb_000818_100--Hb_000134_120 Hb_006022_010 Hb_006022_010 Hb_002311_190--Hb_006022_010 Hb_012262_040 Hb_012262_040 Hb_002311_190--Hb_012262_040 Hb_002311_190--Hb_000503_020 Hb_001623_110 Hb_001623_110 Hb_002311_190--Hb_001623_110 Hb_004738_030 Hb_004738_030 Hb_002311_190--Hb_004738_030 Hb_001349_030 Hb_001349_030 Hb_002311_190--Hb_001349_030 Hb_000054_040 Hb_000054_040 Hb_000503_020--Hb_000054_040 Hb_005062_110 Hb_005062_110 Hb_000503_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_000503_020--Hb_000320_290 Hb_000085_260 Hb_000085_260 Hb_000503_020--Hb_000085_260 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6539 13.9838 39.8304 36.3895 19.6482 24.3682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0532 0.968562 4.95625 12.9491 16.596

CAGE analysis