Hb_008725_120

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig8725: 75866-76485
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20080g
description POPTRDRAFT_409569; hypothetical protein
nr
ID XP_011041705.1
description PREDICTED: GATA transcription factor 16-like [Populus euphratica]
swissprot
ID Q9FJ10
description GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1
trembl
ID B9GSF0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s20080g PE=4 SV=2
Gene Ontology
ID GO:0003700
description gata transcription factor 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61184: 75798-76717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_120 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Populus euphratica]
2 Hb_000062_290 0.2598380904 desease resistance Gene Name: ABC_membrane hypothetical protein POPTR_0008s17960g [Populus trichocarpa]
3 Hb_003992_160 0.2725310967 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
4 Hb_007632_180 0.3012640551 - - Pectate lyase precursor, putative [Ricinus communis]
5 Hb_005539_230 0.3039349403 - - hypothetical protein L484_027799 [Morus notabilis]
6 Hb_005831_010 0.305642073 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
7 Hb_003050_010 0.3169058187 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
8 Hb_000334_160 0.3232029111 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004316_160 0.3249970096 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
10 Hb_005614_030 0.3294278723 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
11 Hb_001096_020 0.3297323933 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
12 Hb_007621_010 0.3324055986 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
13 Hb_000934_240 0.3329446231 - - PREDICTED: peroxidase 13 [Jatropha curcas]
14 Hb_000471_030 0.3366067416 - - -
15 Hb_000152_770 0.3377629644 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
16 Hb_002045_050 0.3388408233 - - -
17 Hb_130498_010 0.3391471773 - - Laccase 17 [Theobroma cacao]
18 Hb_004920_110 0.3393045294 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001085_150 0.3408414926 - - Purple acid phosphatase 15 [Theobroma cacao]
20 Hb_000987_160 0.3414101403 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_008725_120 Hb_008725_120 Hb_000062_290 Hb_000062_290 Hb_008725_120--Hb_000062_290 Hb_003992_160 Hb_003992_160 Hb_008725_120--Hb_003992_160 Hb_007632_180 Hb_007632_180 Hb_008725_120--Hb_007632_180 Hb_005539_230 Hb_005539_230 Hb_008725_120--Hb_005539_230 Hb_005831_010 Hb_005831_010 Hb_008725_120--Hb_005831_010 Hb_003050_010 Hb_003050_010 Hb_008725_120--Hb_003050_010 Hb_001019_070 Hb_001019_070 Hb_000062_290--Hb_001019_070 Hb_001379_050 Hb_001379_050 Hb_000062_290--Hb_001379_050 Hb_001634_030 Hb_001634_030 Hb_000062_290--Hb_001634_030 Hb_002477_100 Hb_002477_100 Hb_000062_290--Hb_002477_100 Hb_000020_070 Hb_000020_070 Hb_000062_290--Hb_000020_070 Hb_006788_090 Hb_006788_090 Hb_003992_160--Hb_006788_090 Hb_011512_010 Hb_011512_010 Hb_003992_160--Hb_011512_010 Hb_000958_060 Hb_000958_060 Hb_003992_160--Hb_000958_060 Hb_028707_120 Hb_028707_120 Hb_003992_160--Hb_028707_120 Hb_000261_530 Hb_000261_530 Hb_003992_160--Hb_000261_530 Hb_000934_240 Hb_000934_240 Hb_003992_160--Hb_000934_240 Hb_001476_030 Hb_001476_030 Hb_007632_180--Hb_001476_030 Hb_007163_030 Hb_007163_030 Hb_007632_180--Hb_007163_030 Hb_007632_180--Hb_011512_010 Hb_007632_180--Hb_003992_160 Hb_004316_160 Hb_004316_160 Hb_007632_180--Hb_004316_160 Hb_007225_010 Hb_007225_010 Hb_007632_180--Hb_007225_010 Hb_118157_010 Hb_118157_010 Hb_005539_230--Hb_118157_010 Hb_118157_020 Hb_118157_020 Hb_005539_230--Hb_118157_020 Hb_007078_010 Hb_007078_010 Hb_005539_230--Hb_007078_010 Hb_000409_040 Hb_000409_040 Hb_005539_230--Hb_000409_040 Hb_099496_010 Hb_099496_010 Hb_005539_230--Hb_099496_010 Hb_000117_140 Hb_000117_140 Hb_005539_230--Hb_000117_140 Hb_005614_030 Hb_005614_030 Hb_005831_010--Hb_005614_030 Hb_023547_020 Hb_023547_020 Hb_005831_010--Hb_023547_020 Hb_001538_040 Hb_001538_040 Hb_005831_010--Hb_001538_040 Hb_005436_030 Hb_005436_030 Hb_005831_010--Hb_005436_030 Hb_005831_010--Hb_003050_010 Hb_000987_160 Hb_000987_160 Hb_005831_010--Hb_000987_160 Hb_001285_020 Hb_001285_020 Hb_003050_010--Hb_001285_020 Hb_002025_290 Hb_002025_290 Hb_003050_010--Hb_002025_290 Hb_003050_010--Hb_000987_160 Hb_000334_160 Hb_000334_160 Hb_003050_010--Hb_000334_160 Hb_009102_010 Hb_009102_010 Hb_003050_010--Hb_009102_010 Hb_000039_190 Hb_000039_190 Hb_003050_010--Hb_000039_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0859749 0.781795 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.242703 0.38607 0.266668

CAGE analysis