Hb_003992_160

Information

Type -
Description -
Location Contig3992: 100665-101424
Sequence    

Annotation

kegg
ID rcu:RCOM_0900030
description Blue copper protein precursor, putative
nr
ID XP_012073173.1
description PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
swissprot
ID Q07488
description Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2
trembl
ID A0A067KLQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06138 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39701: 100633-101505
cDNA
(Sanger)
(ID:Location)		 011_N10.ab1: 100712-101504

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_160 0.0 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
2 Hb_006788_090 0.2188119728 - - -
3 Hb_011512_010 0.2364591796 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_000958_060 0.240760129 - - conserved hypothetical protein [Ricinus communis]
5 Hb_028707_120 0.2459347987 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
6 Hb_000261_530 0.2463382491 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
7 Hb_000934_240 0.2469738443 - - PREDICTED: peroxidase 13 [Jatropha curcas]
8 Hb_002817_010 0.2527814434 - - PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
9 Hb_007225_010 0.2549089469 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
10 Hb_000163_140 0.2561903678 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
11 Hb_000755_090 0.2574950054 - - transferase, putative [Ricinus communis]
12 Hb_002942_120 0.2590489706 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
13 Hb_000941_060 0.2591138534 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
14 Hb_000343_010 0.2595848032 - - F3F9.11 [Arabidopsis thaliana]
15 Hb_002986_140 0.2619937863 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
16 Hb_007632_180 0.2635652166 - - Pectate lyase precursor, putative [Ricinus communis]
17 Hb_005271_100 0.2645027904 - - unnamed protein product [Vitis vinifera]
18 Hb_003638_040 0.2650110763 - - kinesin heavy chain, putative [Ricinus communis]
19 Hb_021346_050 0.2676950548 - - xylulose kinase, putative [Ricinus communis]
20 Hb_005622_030 0.2679335088 - - transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003992_160 Hb_003992_160 Hb_006788_090 Hb_006788_090 Hb_003992_160--Hb_006788_090 Hb_011512_010 Hb_011512_010 Hb_003992_160--Hb_011512_010 Hb_000958_060 Hb_000958_060 Hb_003992_160--Hb_000958_060 Hb_028707_120 Hb_028707_120 Hb_003992_160--Hb_028707_120 Hb_000261_530 Hb_000261_530 Hb_003992_160--Hb_000261_530 Hb_000934_240 Hb_000934_240 Hb_003992_160--Hb_000934_240 Hb_004846_230 Hb_004846_230 Hb_006788_090--Hb_004846_230 Hb_001396_040 Hb_001396_040 Hb_006788_090--Hb_001396_040 Hb_000500_330 Hb_000500_330 Hb_006788_090--Hb_000500_330 Hb_002942_120 Hb_002942_120 Hb_006788_090--Hb_002942_120 Hb_000483_270 Hb_000483_270 Hb_006788_090--Hb_000483_270 Hb_000392_240 Hb_000392_240 Hb_006788_090--Hb_000392_240 Hb_038044_010 Hb_038044_010 Hb_011512_010--Hb_038044_010 Hb_000958_040 Hb_000958_040 Hb_011512_010--Hb_000958_040 Hb_001478_020 Hb_001478_020 Hb_011512_010--Hb_001478_020 Hb_007163_030 Hb_007163_030 Hb_011512_010--Hb_007163_030 Hb_001780_080 Hb_001780_080 Hb_011512_010--Hb_001780_080 Hb_010180_030 Hb_010180_030 Hb_011512_010--Hb_010180_030 Hb_008221_190 Hb_008221_190 Hb_000958_060--Hb_008221_190 Hb_007520_050 Hb_007520_050 Hb_000958_060--Hb_007520_050 Hb_001369_460 Hb_001369_460 Hb_000958_060--Hb_001369_460 Hb_163950_090 Hb_163950_090 Hb_000958_060--Hb_163950_090 Hb_000107_580 Hb_000107_580 Hb_000958_060--Hb_000107_580 Hb_002710_040 Hb_002710_040 Hb_000958_060--Hb_002710_040 Hb_028707_120--Hb_001369_460 Hb_000163_140 Hb_000163_140 Hb_028707_120--Hb_000163_140 Hb_002025_290 Hb_002025_290 Hb_028707_120--Hb_002025_290 Hb_007643_060 Hb_007643_060 Hb_028707_120--Hb_007643_060 Hb_006615_220 Hb_006615_220 Hb_028707_120--Hb_006615_220 Hb_000445_310 Hb_000445_310 Hb_028707_120--Hb_000445_310 Hb_002639_170 Hb_002639_170 Hb_000261_530--Hb_002639_170 Hb_010288_050 Hb_010288_050 Hb_000261_530--Hb_010288_050 Hb_000261_530--Hb_006788_090 Hb_005162_120 Hb_005162_120 Hb_000261_530--Hb_005162_120 Hb_011609_130 Hb_011609_130 Hb_000261_530--Hb_011609_130 Hb_002799_120 Hb_002799_120 Hb_000261_530--Hb_002799_120 Hb_001500_080 Hb_001500_080 Hb_000934_240--Hb_001500_080 Hb_000152_770 Hb_000152_770 Hb_000934_240--Hb_000152_770 Hb_003592_060 Hb_003592_060 Hb_000934_240--Hb_003592_060 Hb_009693_010 Hb_009693_010 Hb_000934_240--Hb_009693_010 Hb_004446_060 Hb_004446_060 Hb_000934_240--Hb_004446_060 Hb_002851_070 Hb_002851_070 Hb_000934_240--Hb_002851_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397488 0.0336074 1.40313 0.0786426 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0723679 0.127691 0.325309 0.424189

CAGE analysis