Hb_011512_010

Information

Type -
Description -
Location Contig11512: 4088-9991
Sequence    

Annotation

kegg
ID rcu:RCOM_1023660
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002518184.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q03662
description Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9RWR5
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_1023660 PE=1 SV=1
Gene Ontology
ID GO:0004462
description probable glutathione s-transferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04562: 9153-9934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_010 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_038044_010 0.1752718928 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
3 Hb_000958_040 0.1771202096 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
4 Hb_001478_020 0.1820749857 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
5 Hb_007163_030 0.1829070462 - - hypothetical protein RCOM_0187400 [Ricinus communis]
6 Hb_001780_080 0.1861815043 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
7 Hb_010180_030 0.186865622 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
8 Hb_003784_040 0.1913070595 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
9 Hb_029510_130 0.2006828758 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
10 Hb_002007_040 0.203994051 - - unnamed protein product [Coffea canephora]
11 Hb_001934_040 0.2053529667 - - PREDICTED: vacuolar iron transporter 1-like [Jatropha curcas]
12 Hb_000941_060 0.2067758897 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
13 Hb_001501_070 0.207479915 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
14 Hb_006788_090 0.2091107376 - - -
15 Hb_114310_100 0.210841487 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
16 Hb_000500_340 0.2120005997 - - PREDICTED: exonuclease 1 [Jatropha curcas]
17 Hb_000359_200 0.2125031117 - - triacylglycerol lipase, putative [Ricinus communis]
18 Hb_002307_020 0.2135803652 - - PREDICTED: histone H1-like [Jatropha curcas]
19 Hb_000365_210 0.214190644 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
20 Hb_130498_010 0.2161622961 - - Laccase 17 [Theobroma cacao]

Gene co-expression network

sample Hb_011512_010 Hb_011512_010 Hb_038044_010 Hb_038044_010 Hb_011512_010--Hb_038044_010 Hb_000958_040 Hb_000958_040 Hb_011512_010--Hb_000958_040 Hb_001478_020 Hb_001478_020 Hb_011512_010--Hb_001478_020 Hb_007163_030 Hb_007163_030 Hb_011512_010--Hb_007163_030 Hb_001780_080 Hb_001780_080 Hb_011512_010--Hb_001780_080 Hb_010180_030 Hb_010180_030 Hb_011512_010--Hb_010180_030 Hb_001501_070 Hb_001501_070 Hb_038044_010--Hb_001501_070 Hb_029510_130 Hb_029510_130 Hb_038044_010--Hb_029510_130 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_024973_020 Hb_024973_020 Hb_038044_010--Hb_024973_020 Hb_038044_010--Hb_001478_020 Hb_002942_120 Hb_002942_120 Hb_038044_010--Hb_002942_120 Hb_000954_040 Hb_000954_040 Hb_000958_040--Hb_000954_040 Hb_000958_040--Hb_007163_030 Hb_011861_040 Hb_011861_040 Hb_000958_040--Hb_011861_040 Hb_001328_070 Hb_001328_070 Hb_000958_040--Hb_001328_070 Hb_001366_380 Hb_001366_380 Hb_000958_040--Hb_001366_380 Hb_077562_020 Hb_077562_020 Hb_000958_040--Hb_077562_020 Hb_001478_020--Hb_010180_030 Hb_001478_020--Hb_001501_070 Hb_001478_020--Hb_001780_080 Hb_003784_040 Hb_003784_040 Hb_001478_020--Hb_003784_040 Hb_001478_020--Hb_029510_130 Hb_007163_030--Hb_001328_070 Hb_001934_040 Hb_001934_040 Hb_007163_030--Hb_001934_040 Hb_007163_030--Hb_011861_040 Hb_001649_050 Hb_001649_050 Hb_007163_030--Hb_001649_050 Hb_000334_120 Hb_000334_120 Hb_007163_030--Hb_000334_120 Hb_001780_080--Hb_003784_040 Hb_001780_080--Hb_010180_030 Hb_001780_080--Hb_001501_070 Hb_000139_280 Hb_000139_280 Hb_001780_080--Hb_000139_280 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210 Hb_010180_030--Hb_003784_040 Hb_010180_030--Hb_001501_070 Hb_005725_150 Hb_005725_150 Hb_010180_030--Hb_005725_150 Hb_005504_040 Hb_005504_040 Hb_010180_030--Hb_005504_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0822638 0.161131 6.46054 0.982518 0.0534046 0.00705603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.458019 0.374822 0.357023 1.64913 0.673634

CAGE analysis