Hb_028707_120

Information

Type -
Description -
Location Contig28707: 103008-106788
Sequence    

Annotation

kegg
ID rcu:RCOM_1686990
description hypothetical protein
nr
ID XP_012086890.1
description PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RCC7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1686990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29933: 102140-102377 , PASA_asmbl_29934: 102955-104105 , PASA_asmbl_29936: 106508-106865 , PASA_asmbl_29937: 105287-106361 , PASA_asmbl_29938: 105287-108716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028707_120 0.0 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
2 Hb_001369_460 0.1308459709 - - vacuolar invertase [Manihot esculenta]
3 Hb_000163_140 0.1308905525 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
4 Hb_002025_290 0.1340161824 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
5 Hb_007643_060 0.1348711462 - - -
6 Hb_006615_220 0.1478704117 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
7 Hb_000445_310 0.1506927267 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
8 Hb_001638_190 0.1515735233 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
9 Hb_001958_030 0.1532532052 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
10 Hb_145188_010 0.1546315957 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
11 Hb_003453_060 0.1577061349 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
12 Hb_003043_130 0.1630238527 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
13 Hb_001544_060 0.1634367623 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
14 Hb_000343_010 0.1637925457 - - F3F9.11 [Arabidopsis thaliana]
15 Hb_001153_160 0.1639396819 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
16 Hb_007850_100 0.1649200448 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
17 Hb_008643_220 0.165638803 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
18 Hb_004213_010 0.1669043742 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_000035_150 0.1673387918 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
20 Hb_009693_010 0.1681282141 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]

Gene co-expression network

sample Hb_028707_120 Hb_028707_120 Hb_001369_460 Hb_001369_460 Hb_028707_120--Hb_001369_460 Hb_000163_140 Hb_000163_140 Hb_028707_120--Hb_000163_140 Hb_002025_290 Hb_002025_290 Hb_028707_120--Hb_002025_290 Hb_007643_060 Hb_007643_060 Hb_028707_120--Hb_007643_060 Hb_006615_220 Hb_006615_220 Hb_028707_120--Hb_006615_220 Hb_000445_310 Hb_000445_310 Hb_028707_120--Hb_000445_310 Hb_174168_010 Hb_174168_010 Hb_001369_460--Hb_174168_010 Hb_040718_010 Hb_040718_010 Hb_001369_460--Hb_040718_010 Hb_007520_050 Hb_007520_050 Hb_001369_460--Hb_007520_050 Hb_000947_010 Hb_000947_010 Hb_001369_460--Hb_000947_010 Hb_006938_060 Hb_006938_060 Hb_001369_460--Hb_006938_060 Hb_003043_130 Hb_003043_130 Hb_001369_460--Hb_003043_130 Hb_000163_140--Hb_000445_310 Hb_002918_170 Hb_002918_170 Hb_000163_140--Hb_002918_170 Hb_001958_030 Hb_001958_030 Hb_000163_140--Hb_001958_030 Hb_000300_070 Hb_000300_070 Hb_000163_140--Hb_000300_070 Hb_003387_010 Hb_003387_010 Hb_000163_140--Hb_003387_010 Hb_000188_070 Hb_000188_070 Hb_000163_140--Hb_000188_070 Hb_001285_020 Hb_001285_020 Hb_002025_290--Hb_001285_020 Hb_003453_060 Hb_003453_060 Hb_002025_290--Hb_003453_060 Hb_005575_010 Hb_005575_010 Hb_002025_290--Hb_005575_010 Hb_009102_010 Hb_009102_010 Hb_002025_290--Hb_009102_010 Hb_003050_010 Hb_003050_010 Hb_002025_290--Hb_003050_010 Hb_001544_060 Hb_001544_060 Hb_002025_290--Hb_001544_060 Hb_000035_150 Hb_000035_150 Hb_007643_060--Hb_000035_150 Hb_007643_060--Hb_006615_220 Hb_007951_020 Hb_007951_020 Hb_007643_060--Hb_007951_020 Hb_012691_010 Hb_012691_010 Hb_007643_060--Hb_012691_010 Hb_005743_010 Hb_005743_010 Hb_007643_060--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_007643_060--Hb_000343_010 Hb_006615_220--Hb_000035_150 Hb_006615_220--Hb_005743_010 Hb_006615_220--Hb_000343_010 Hb_006266_010 Hb_006266_010 Hb_006615_220--Hb_006266_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060 Hb_000445_310--Hb_001544_060 Hb_000445_310--Hb_000300_070 Hb_000252_240 Hb_000252_240 Hb_000445_310--Hb_000252_240 Hb_000445_310--Hb_001958_030 Hb_000445_310--Hb_000188_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.251076 4.95419 0.703032 0 0.0647087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0493614 0.025895 0 0.981574 1.87415

CAGE analysis