Hb_001379_050

Information

Type -
Description -
Location Contig1379: 20821-21015
Sequence    

Annotation

kegg
ID rcu:RCOM_1383280
description hypothetical protein
nr
ID XP_002522120.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S804
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001379_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000062_290 0.2507373532 desease resistance Gene Name: ABC_membrane hypothetical protein POPTR_0008s17960g [Populus trichocarpa]
3 Hb_000334_160 0.2571619728 - - conserved hypothetical protein [Ricinus communis]
4 Hb_137222_030 0.2822298917 - - -
5 Hb_004316_160 0.2830196493 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
6 Hb_134174_010 0.2884247444 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_000471_030 0.2939713405 - - -
8 Hb_001019_070 0.2957278382 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
9 Hb_003050_010 0.3016491069 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
10 Hb_000462_080 0.3029523051 - - PREDICTED: quercetin 3-O-methyltransferase 1 [Jatropha curcas]
11 Hb_006294_030 0.3032981072 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_012691_010 0.3064316832 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
13 Hb_008775_030 0.3070490783 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
14 Hb_130498_010 0.3078538591 - - Laccase 17 [Theobroma cacao]
15 Hb_001634_030 0.3094183513 - - Receptor like protein 1, putative [Theobroma cacao]
16 Hb_005831_010 0.3102180803 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
17 Hb_004306_130 0.3137970889 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
18 Hb_000260_240 0.3178327945 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
19 Hb_000010_150 0.3178519211 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
20 Hb_000500_370 0.3190507431 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001379_050 Hb_001379_050 Hb_000062_290 Hb_000062_290 Hb_001379_050--Hb_000062_290 Hb_000334_160 Hb_000334_160 Hb_001379_050--Hb_000334_160 Hb_137222_030 Hb_137222_030 Hb_001379_050--Hb_137222_030 Hb_004316_160 Hb_004316_160 Hb_001379_050--Hb_004316_160 Hb_134174_010 Hb_134174_010 Hb_001379_050--Hb_134174_010 Hb_000471_030 Hb_000471_030 Hb_001379_050--Hb_000471_030 Hb_001019_070 Hb_001019_070 Hb_000062_290--Hb_001019_070 Hb_001634_030 Hb_001634_030 Hb_000062_290--Hb_001634_030 Hb_002477_100 Hb_002477_100 Hb_000062_290--Hb_002477_100 Hb_008725_120 Hb_008725_120 Hb_000062_290--Hb_008725_120 Hb_000020_070 Hb_000020_070 Hb_000062_290--Hb_000020_070 Hb_000987_160 Hb_000987_160 Hb_000334_160--Hb_000987_160 Hb_003050_010 Hb_003050_010 Hb_000334_160--Hb_003050_010 Hb_000039_190 Hb_000039_190 Hb_000334_160--Hb_000039_190 Hb_004554_010 Hb_004554_010 Hb_000334_160--Hb_004554_010 Hb_000300_070 Hb_000300_070 Hb_000334_160--Hb_000300_070 Hb_001285_020 Hb_001285_020 Hb_000334_160--Hb_001285_020 Hb_000245_170 Hb_000245_170 Hb_137222_030--Hb_000245_170 Hb_137222_030--Hb_001019_070 Hb_000260_240 Hb_000260_240 Hb_137222_030--Hb_000260_240 Hb_000076_090 Hb_000076_090 Hb_137222_030--Hb_000076_090 Hb_002279_020 Hb_002279_020 Hb_137222_030--Hb_002279_020 Hb_000563_510 Hb_000563_510 Hb_137222_030--Hb_000563_510 Hb_004316_160--Hb_000471_030 Hb_006294_030 Hb_006294_030 Hb_004316_160--Hb_006294_030 Hb_012691_010 Hb_012691_010 Hb_004316_160--Hb_012691_010 Hb_001476_030 Hb_001476_030 Hb_004316_160--Hb_001476_030 Hb_007654_010 Hb_007654_010 Hb_004316_160--Hb_007654_010 Hb_068804_070 Hb_068804_070 Hb_004316_160--Hb_068804_070 Hb_001300_180 Hb_001300_180 Hb_134174_010--Hb_001300_180 Hb_002984_040 Hb_002984_040 Hb_134174_010--Hb_002984_040 Hb_003881_020 Hb_003881_020 Hb_134174_010--Hb_003881_020 Hb_000501_110 Hb_000501_110 Hb_134174_010--Hb_000501_110 Hb_134174_010--Hb_001634_030 Hb_137272_010 Hb_137272_010 Hb_134174_010--Hb_137272_010 Hb_000471_030--Hb_006294_030 Hb_000471_030--Hb_012691_010 Hb_000471_030--Hb_068804_070 Hb_005743_010 Hb_005743_010 Hb_000471_030--Hb_005743_010 Hb_000471_030--Hb_001634_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.14459 38.3458 0 0 4.03553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 4.02177 0 14.1353 8.72685

CAGE analysis