Hb_137222_030

Information

Type -
Description -
Location Contig137222: 26270-27719
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137222_030 0.0 - - -
2 Hb_000245_170 0.1301908608 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_001019_070 0.243389126 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
4 Hb_000260_240 0.2591723213 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
5 Hb_000076_090 0.2634611819 - - protein with unknown function [Ricinus communis]
6 Hb_002279_020 0.2638805063 - - hypothetical protein POPTR_0009s03100g [Populus trichocarpa]
7 Hb_000563_510 0.2769874743 - - epoxide hydrolase, putative [Ricinus communis]
8 Hb_034585_070 0.2773190266 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
9 Hb_003599_020 0.2781385546 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
10 Hb_003349_020 0.2808395447 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
11 Hb_001379_050 0.2822298917 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000803_250 0.2903319543 - - PREDICTED: uncharacterized protein LOC105648317 isoform X1 [Jatropha curcas]
13 Hb_107078_010 0.2911569383 - - -
14 Hb_002477_170 0.2921977447 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_002477_060 0.2927981281 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006694_030 0.2940588909 - - -
17 Hb_101034_020 0.2957804566 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
18 Hb_005599_020 0.2972146345 - - Protein MLO, putative [Ricinus communis]
19 Hb_140000_010 0.2976407388 - - receptor-kinase, putative [Ricinus communis]
20 Hb_008173_130 0.2982701143 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_137222_030 Hb_137222_030 Hb_000245_170 Hb_000245_170 Hb_137222_030--Hb_000245_170 Hb_001019_070 Hb_001019_070 Hb_137222_030--Hb_001019_070 Hb_000260_240 Hb_000260_240 Hb_137222_030--Hb_000260_240 Hb_000076_090 Hb_000076_090 Hb_137222_030--Hb_000076_090 Hb_002279_020 Hb_002279_020 Hb_137222_030--Hb_002279_020 Hb_000563_510 Hb_000563_510 Hb_137222_030--Hb_000563_510 Hb_000245_170--Hb_000076_090 Hb_000245_170--Hb_001019_070 Hb_004724_050 Hb_004724_050 Hb_000245_170--Hb_004724_050 Hb_000479_340 Hb_000479_340 Hb_000245_170--Hb_000479_340 Hb_008887_030 Hb_008887_030 Hb_000245_170--Hb_008887_030 Hb_001019_070--Hb_000260_240 Hb_004846_230 Hb_004846_230 Hb_001019_070--Hb_004846_230 Hb_003549_130 Hb_003549_130 Hb_001019_070--Hb_003549_130 Hb_021443_030 Hb_021443_030 Hb_001019_070--Hb_021443_030 Hb_006788_090 Hb_006788_090 Hb_001019_070--Hb_006788_090 Hb_008173_130 Hb_008173_130 Hb_001019_070--Hb_008173_130 Hb_000260_240--Hb_008173_130 Hb_107078_010 Hb_107078_010 Hb_000260_240--Hb_107078_010 Hb_001898_100 Hb_001898_100 Hb_000260_240--Hb_001898_100 Hb_001579_190 Hb_001579_190 Hb_000260_240--Hb_001579_190 Hb_034585_070 Hb_034585_070 Hb_000260_240--Hb_034585_070 Hb_002301_210 Hb_002301_210 Hb_000076_090--Hb_002301_210 Hb_000136_020 Hb_000136_020 Hb_000076_090--Hb_000136_020 Hb_000076_090--Hb_107078_010 Hb_001975_050 Hb_001975_050 Hb_000076_090--Hb_001975_050 Hb_001250_040 Hb_001250_040 Hb_000076_090--Hb_001250_040 Hb_000093_140 Hb_000093_140 Hb_000076_090--Hb_000093_140 Hb_101034_020 Hb_101034_020 Hb_002279_020--Hb_101034_020 Hb_092458_010 Hb_092458_010 Hb_002279_020--Hb_092458_010 Hb_018633_010 Hb_018633_010 Hb_002279_020--Hb_018633_010 Hb_140000_010 Hb_140000_010 Hb_002279_020--Hb_140000_010 Hb_005599_020 Hb_005599_020 Hb_002279_020--Hb_005599_020 Hb_086614_010 Hb_086614_010 Hb_002279_020--Hb_086614_010 Hb_002965_070 Hb_002965_070 Hb_000563_510--Hb_002965_070 Hb_002960_100 Hb_002960_100 Hb_000563_510--Hb_002960_100 Hb_006694_030 Hb_006694_030 Hb_000563_510--Hb_006694_030 Hb_089114_010 Hb_089114_010 Hb_000563_510--Hb_089114_010 Hb_004837_200 Hb_004837_200 Hb_000563_510--Hb_004837_200 Hb_000563_510--Hb_086614_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0454659 0.201098 0.526673 0 0 0.0697304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0682532 0.159935

CAGE analysis