Hb_000062_290

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig62: 234021-243008
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17960g
description POPTRDRAFT_420503; hypothetical protein
nr
ID XP_002312645.2
description hypothetical protein POPTR_0008s17960g [Populus trichocarpa]
swissprot
ID Q9LK64
description ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1
trembl
ID B9HLA5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s17960g PE=3 SV=2
Gene Ontology
ID GO:0016021
description abc transporter c family member 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_290 0.0 desease resistance Gene Name: ABC_membrane hypothetical protein POPTR_0008s17960g [Populus trichocarpa]
2 Hb_001019_070 0.2366868156 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
3 Hb_001379_050 0.2507373532 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001634_030 0.2560702757 - - Receptor like protein 1, putative [Theobroma cacao]
5 Hb_002477_100 0.2584996588 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
6 Hb_008725_120 0.2598380904 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Populus euphratica]
7 Hb_000020_070 0.2718164325 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
8 Hb_006294_030 0.2738916918 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_004920_110 0.2741129284 - - conserved hypothetical protein [Ricinus communis]
10 Hb_168509_020 0.2744274055 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
11 Hb_130498_010 0.2752586014 - - Laccase 17 [Theobroma cacao]
12 Hb_000462_080 0.2759854556 - - PREDICTED: quercetin 3-O-methyltransferase 1 [Jatropha curcas]
13 Hb_000260_240 0.2760892 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
14 Hb_000010_150 0.2770750894 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
15 Hb_000340_350 0.2793061387 - - PREDICTED: sugar transporter ERD6-like 7 isoform X1 [Jatropha curcas]
16 Hb_134174_010 0.2807671305 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_004316_160 0.2816529439 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
18 Hb_000471_030 0.2823114375 - - -
19 Hb_003058_030 0.2828940992 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_164162_010 0.2853785118 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]

Gene co-expression network

sample Hb_000062_290 Hb_000062_290 Hb_001019_070 Hb_001019_070 Hb_000062_290--Hb_001019_070 Hb_001379_050 Hb_001379_050 Hb_000062_290--Hb_001379_050 Hb_001634_030 Hb_001634_030 Hb_000062_290--Hb_001634_030 Hb_002477_100 Hb_002477_100 Hb_000062_290--Hb_002477_100 Hb_008725_120 Hb_008725_120 Hb_000062_290--Hb_008725_120 Hb_000020_070 Hb_000020_070 Hb_000062_290--Hb_000020_070 Hb_000260_240 Hb_000260_240 Hb_001019_070--Hb_000260_240 Hb_004846_230 Hb_004846_230 Hb_001019_070--Hb_004846_230 Hb_003549_130 Hb_003549_130 Hb_001019_070--Hb_003549_130 Hb_021443_030 Hb_021443_030 Hb_001019_070--Hb_021443_030 Hb_006788_090 Hb_006788_090 Hb_001019_070--Hb_006788_090 Hb_008173_130 Hb_008173_130 Hb_001019_070--Hb_008173_130 Hb_000334_160 Hb_000334_160 Hb_001379_050--Hb_000334_160 Hb_137222_030 Hb_137222_030 Hb_001379_050--Hb_137222_030 Hb_004316_160 Hb_004316_160 Hb_001379_050--Hb_004316_160 Hb_134174_010 Hb_134174_010 Hb_001379_050--Hb_134174_010 Hb_000471_030 Hb_000471_030 Hb_001379_050--Hb_000471_030 Hb_006294_030 Hb_006294_030 Hb_001634_030--Hb_006294_030 Hb_004551_050 Hb_004551_050 Hb_001634_030--Hb_004551_050 Hb_137272_010 Hb_137272_010 Hb_001634_030--Hb_137272_010 Hb_000567_060 Hb_000567_060 Hb_001634_030--Hb_000567_060 Hb_068804_070 Hb_068804_070 Hb_001634_030--Hb_068804_070 Hb_003881_020 Hb_003881_020 Hb_001634_030--Hb_003881_020 Hb_043987_010 Hb_043987_010 Hb_002477_100--Hb_043987_010 Hb_002030_180 Hb_002030_180 Hb_002477_100--Hb_002030_180 Hb_023278_030 Hb_023278_030 Hb_002477_100--Hb_023278_030 Hb_002597_020 Hb_002597_020 Hb_002477_100--Hb_002597_020 Hb_002477_100--Hb_000020_070 Hb_001318_110 Hb_001318_110 Hb_002477_100--Hb_001318_110 Hb_003992_160 Hb_003992_160 Hb_008725_120--Hb_003992_160 Hb_007632_180 Hb_007632_180 Hb_008725_120--Hb_007632_180 Hb_005539_230 Hb_005539_230 Hb_008725_120--Hb_005539_230 Hb_005831_010 Hb_005831_010 Hb_008725_120--Hb_005831_010 Hb_003050_010 Hb_003050_010 Hb_008725_120--Hb_003050_010 Hb_001247_020 Hb_001247_020 Hb_000020_070--Hb_001247_020 Hb_001636_060 Hb_001636_060 Hb_000020_070--Hb_001636_060 Hb_007894_180 Hb_007894_180 Hb_000020_070--Hb_007894_180 Hb_001511_250 Hb_001511_250 Hb_000020_070--Hb_001511_250 Hb_005080_020 Hb_005080_020 Hb_000020_070--Hb_005080_020 Hb_119316_020 Hb_119316_020 Hb_000020_070--Hb_119316_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0678991 0.184928 0.00608564 0 0.00766077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00766995 0.0294966 0.0728788 0.0329153

CAGE analysis