Hb_007632_180

Information

Type -
Description -
Location Contig7632: 163918-165731
Sequence    

Annotation

kegg
ID rcu:RCOM_0521920
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_002522747.1
description Pectate lyase precursor, putative [Ricinus communis]
swissprot
ID Q93Z25
description Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1
trembl
ID B9S9S8
description Pectate lyase OS=Ricinus communis GN=RCOM_0521920 PE=3 SV=1
Gene Ontology
ID GO:0005727
description pectate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_180 0.0 - - Pectate lyase precursor, putative [Ricinus communis]
2 Hb_001476_030 0.2449619888 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
3 Hb_007163_030 0.2453128443 - - hypothetical protein RCOM_0187400 [Ricinus communis]
4 Hb_011512_010 0.2579043463 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_003992_160 0.2635652166 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
6 Hb_004316_160 0.2642534786 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
7 Hb_007225_010 0.2707984259 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
8 Hb_004316_080 0.2711895235 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
9 Hb_007951_020 0.2726792842 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
10 Hb_000755_090 0.2752474248 - - transferase, putative [Ricinus communis]
11 Hb_000343_010 0.2780920692 - - F3F9.11 [Arabidopsis thaliana]
12 Hb_000471_030 0.2794266321 - - -
13 Hb_000958_040 0.2855129565 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
14 Hb_000552_030 0.2861411688 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
15 Hb_004218_050 0.2863615252 - - annexin [Manihot esculenta]
16 Hb_027556_070 0.2876220906 - - conserved hypothetical protein [Ricinus communis]
17 Hb_038044_010 0.2876747409 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
18 Hb_012691_010 0.288901555 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
19 Hb_000265_100 0.2895312256 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
20 Hb_000103_460 0.2912341114 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_007632_180 Hb_007632_180 Hb_001476_030 Hb_001476_030 Hb_007632_180--Hb_001476_030 Hb_007163_030 Hb_007163_030 Hb_007632_180--Hb_007163_030 Hb_011512_010 Hb_011512_010 Hb_007632_180--Hb_011512_010 Hb_003992_160 Hb_003992_160 Hb_007632_180--Hb_003992_160 Hb_004316_160 Hb_004316_160 Hb_007632_180--Hb_004316_160 Hb_007225_010 Hb_007225_010 Hb_007632_180--Hb_007225_010 Hb_004316_080 Hb_004316_080 Hb_001476_030--Hb_004316_080 Hb_007951_020 Hb_007951_020 Hb_001476_030--Hb_007951_020 Hb_006316_090 Hb_006316_090 Hb_001476_030--Hb_006316_090 Hb_000358_010 Hb_000358_010 Hb_001476_030--Hb_000358_010 Hb_000103_460 Hb_000103_460 Hb_001476_030--Hb_000103_460 Hb_001769_150 Hb_001769_150 Hb_001476_030--Hb_001769_150 Hb_001328_070 Hb_001328_070 Hb_007163_030--Hb_001328_070 Hb_000958_040 Hb_000958_040 Hb_007163_030--Hb_000958_040 Hb_001934_040 Hb_001934_040 Hb_007163_030--Hb_001934_040 Hb_011861_040 Hb_011861_040 Hb_007163_030--Hb_011861_040 Hb_001649_050 Hb_001649_050 Hb_007163_030--Hb_001649_050 Hb_000334_120 Hb_000334_120 Hb_007163_030--Hb_000334_120 Hb_038044_010 Hb_038044_010 Hb_011512_010--Hb_038044_010 Hb_011512_010--Hb_000958_040 Hb_001478_020 Hb_001478_020 Hb_011512_010--Hb_001478_020 Hb_011512_010--Hb_007163_030 Hb_001780_080 Hb_001780_080 Hb_011512_010--Hb_001780_080 Hb_010180_030 Hb_010180_030 Hb_011512_010--Hb_010180_030 Hb_006788_090 Hb_006788_090 Hb_003992_160--Hb_006788_090 Hb_003992_160--Hb_011512_010 Hb_000958_060 Hb_000958_060 Hb_003992_160--Hb_000958_060 Hb_028707_120 Hb_028707_120 Hb_003992_160--Hb_028707_120 Hb_000261_530 Hb_000261_530 Hb_003992_160--Hb_000261_530 Hb_000934_240 Hb_000934_240 Hb_003992_160--Hb_000934_240 Hb_000471_030 Hb_000471_030 Hb_004316_160--Hb_000471_030 Hb_006294_030 Hb_006294_030 Hb_004316_160--Hb_006294_030 Hb_012691_010 Hb_012691_010 Hb_004316_160--Hb_012691_010 Hb_004316_160--Hb_001476_030 Hb_007654_010 Hb_007654_010 Hb_004316_160--Hb_007654_010 Hb_068804_070 Hb_068804_070 Hb_004316_160--Hb_068804_070 Hb_005839_080 Hb_005839_080 Hb_007225_010--Hb_005839_080 Hb_000152_580 Hb_000152_580 Hb_007225_010--Hb_000152_580 Hb_000163_140 Hb_000163_140 Hb_007225_010--Hb_000163_140 Hb_008132_010 Hb_008132_010 Hb_007225_010--Hb_008132_010 Hb_001476_040 Hb_001476_040 Hb_007225_010--Hb_001476_040 Hb_002918_170 Hb_002918_170 Hb_007225_010--Hb_002918_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0342574 1.3534 0.0800568 0.0493379 0.0536064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.114793 0.370043 0.127725

CAGE analysis