Hb_007225_010

Information

Type -
Description -
Location Contig7225: 26961-29597
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09900g
description POPTRDRAFT_560888; phospholipid/glycerol acyltransferase family protein
nr
ID XP_011047425.1
description PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
swissprot
ID O80437
description Glycerol-3-phosphate 2-O-acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1
trembl
ID A9PGT0
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0003841
description glycerol-3-phosphate 2-o-acyltransferase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007225_010 0.0 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
2 Hb_005839_080 0.1398207664 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
3 Hb_000152_580 0.1430874796 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
4 Hb_000163_140 0.1675556107 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
5 Hb_008132_010 0.1718627408 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
6 Hb_001476_040 0.1741517723 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
7 Hb_002918_170 0.1775447701 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
8 Hb_000664_080 0.1851533619 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
9 Hb_152180_010 0.1904332578 - - Blue copper protein precursor, putative [Ricinus communis]
10 Hb_007951_020 0.1911838509 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
11 Hb_003387_010 0.1924440471 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
12 Hb_000465_110 0.1930295837 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
13 Hb_012084_010 0.1934007278 - - cold regulated protein [Manihot esculenta]
14 Hb_003209_190 0.199749021 - - hypothetical protein POPTR_0010s16770g [Populus trichocarpa]
15 Hb_000445_310 0.2001604564 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
16 Hb_007632_200 0.2017441867 - - hypothetical protein L484_018221 [Morus notabilis]
17 Hb_027556_070 0.2022429372 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004554_010 0.2026514025 - - PREDICTED: uncharacterized protein LOC105636233 isoform X1 [Jatropha curcas]
19 Hb_000282_010 0.2026825308 - - conserved hypothetical protein [Ricinus communis]
20 Hb_089736_010 0.2036710138 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]

Gene co-expression network

sample Hb_007225_010 Hb_007225_010 Hb_005839_080 Hb_005839_080 Hb_007225_010--Hb_005839_080 Hb_000152_580 Hb_000152_580 Hb_007225_010--Hb_000152_580 Hb_000163_140 Hb_000163_140 Hb_007225_010--Hb_000163_140 Hb_008132_010 Hb_008132_010 Hb_007225_010--Hb_008132_010 Hb_001476_040 Hb_001476_040 Hb_007225_010--Hb_001476_040 Hb_002918_170 Hb_002918_170 Hb_007225_010--Hb_002918_170 Hb_012084_010 Hb_012084_010 Hb_005839_080--Hb_012084_010 Hb_007632_200 Hb_007632_200 Hb_005839_080--Hb_007632_200 Hb_005839_080--Hb_000152_580 Hb_022406_010 Hb_022406_010 Hb_005839_080--Hb_022406_010 Hb_003964_050 Hb_003964_050 Hb_005839_080--Hb_003964_050 Hb_088118_010 Hb_088118_010 Hb_005839_080--Hb_088118_010 Hb_001677_070 Hb_001677_070 Hb_000152_580--Hb_001677_070 Hb_001102_030 Hb_001102_030 Hb_000152_580--Hb_001102_030 Hb_000465_110 Hb_000465_110 Hb_000152_580--Hb_000465_110 Hb_001921_040 Hb_001921_040 Hb_000152_580--Hb_001921_040 Hb_000556_050 Hb_000556_050 Hb_000152_580--Hb_000556_050 Hb_000445_310 Hb_000445_310 Hb_000163_140--Hb_000445_310 Hb_000163_140--Hb_002918_170 Hb_001958_030 Hb_001958_030 Hb_000163_140--Hb_001958_030 Hb_000300_070 Hb_000300_070 Hb_000163_140--Hb_000300_070 Hb_003387_010 Hb_003387_010 Hb_000163_140--Hb_003387_010 Hb_000188_070 Hb_000188_070 Hb_000163_140--Hb_000188_070 Hb_028903_010 Hb_028903_010 Hb_008132_010--Hb_028903_010 Hb_000032_080 Hb_000032_080 Hb_008132_010--Hb_000032_080 Hb_001769_150 Hb_001769_150 Hb_008132_010--Hb_001769_150 Hb_011063_030 Hb_011063_030 Hb_008132_010--Hb_011063_030 Hb_007044_260 Hb_007044_260 Hb_008132_010--Hb_007044_260 Hb_000421_060 Hb_000421_060 Hb_008132_010--Hb_000421_060 Hb_145188_010 Hb_145188_010 Hb_001476_040--Hb_145188_010 Hb_000362_080 Hb_000362_080 Hb_001476_040--Hb_000362_080 Hb_009846_010 Hb_009846_010 Hb_001476_040--Hb_009846_010 Hb_007262_010 Hb_007262_010 Hb_001476_040--Hb_007262_010 Hb_004218_060 Hb_004218_060 Hb_001476_040--Hb_004218_060 Hb_001476_040--Hb_000163_140 Hb_002918_170--Hb_003387_010 Hb_002918_170--Hb_001958_030 Hb_002918_170--Hb_000188_070 Hb_089736_010 Hb_089736_010 Hb_002918_170--Hb_089736_010 Hb_104014_010 Hb_104014_010 Hb_002918_170--Hb_104014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.31779 29.4633 1.22271 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.020457 0 3.28419 4.4351

CAGE analysis