Hb_003125_130

Information

Type -
Description -
Location Contig3125: 106846-107502
Sequence    

Annotation

kegg
ID rcu:RCOM_1506030
description hypothetical protein
nr
ID KDP22615.1
description hypothetical protein JCGZ_26446 [Jatropha curcas]
swissprot
ID Q9LQ32
description Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1
trembl
ID A0A067JRK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26446 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_130 0.0 - - hypothetical protein JCGZ_26446 [Jatropha curcas]
2 Hb_002820_150 0.1898624286 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000230_450 0.1938716522 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005725_160 0.1949953799 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
5 Hb_000429_160 0.1955428413 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
6 Hb_000109_190 0.1960476484 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
7 Hb_106552_060 0.1973323748 - - STS14 protein precursor, putative [Ricinus communis]
8 Hb_000656_030 0.2050439678 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001322_100 0.2069728469 - - PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
10 Hb_005539_140 0.2077544984 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
11 Hb_003006_090 0.2090419964 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
12 Hb_003462_040 0.2099431568 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_020805_120 0.2115991435 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
14 Hb_017098_040 0.2138997125 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
15 Hb_002559_030 0.2152612298 - - oxidoreductase, putative [Ricinus communis]
16 Hb_002999_070 0.2159259539 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
17 Hb_003086_030 0.2168864647 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
18 Hb_005408_100 0.218893262 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
19 Hb_003952_130 0.2191290685 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
20 Hb_009222_080 0.2216381169 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]

Gene co-expression network

sample Hb_003125_130 Hb_003125_130 Hb_002820_150 Hb_002820_150 Hb_003125_130--Hb_002820_150 Hb_000230_450 Hb_000230_450 Hb_003125_130--Hb_000230_450 Hb_005725_160 Hb_005725_160 Hb_003125_130--Hb_005725_160 Hb_000429_160 Hb_000429_160 Hb_003125_130--Hb_000429_160 Hb_000109_190 Hb_000109_190 Hb_003125_130--Hb_000109_190 Hb_106552_060 Hb_106552_060 Hb_003125_130--Hb_106552_060 Hb_003462_040 Hb_003462_040 Hb_002820_150--Hb_003462_040 Hb_003929_240 Hb_003929_240 Hb_002820_150--Hb_003929_240 Hb_000117_030 Hb_000117_030 Hb_002820_150--Hb_000117_030 Hb_006750_010 Hb_006750_010 Hb_002820_150--Hb_006750_010 Hb_000094_170 Hb_000094_170 Hb_002820_150--Hb_000094_170 Hb_004242_090 Hb_004242_090 Hb_002820_150--Hb_004242_090 Hb_001486_100 Hb_001486_100 Hb_000230_450--Hb_001486_100 Hb_000230_450--Hb_000429_160 Hb_031862_120 Hb_031862_120 Hb_000230_450--Hb_031862_120 Hb_143871_010 Hb_143871_010 Hb_000230_450--Hb_143871_010 Hb_000326_080 Hb_000326_080 Hb_000230_450--Hb_000326_080 Hb_000363_250 Hb_000363_250 Hb_000230_450--Hb_000363_250 Hb_001950_100 Hb_001950_100 Hb_005725_160--Hb_001950_100 Hb_001232_040 Hb_001232_040 Hb_005725_160--Hb_001232_040 Hb_009222_080 Hb_009222_080 Hb_005725_160--Hb_009222_080 Hb_003097_220 Hb_003097_220 Hb_005725_160--Hb_003097_220 Hb_000622_030 Hb_000622_030 Hb_005725_160--Hb_000622_030 Hb_002168_070 Hb_002168_070 Hb_005725_160--Hb_002168_070 Hb_001318_100 Hb_001318_100 Hb_000429_160--Hb_001318_100 Hb_003125_210 Hb_003125_210 Hb_000429_160--Hb_003125_210 Hb_000429_160--Hb_031862_120 Hb_028227_040 Hb_028227_040 Hb_000429_160--Hb_028227_040 Hb_003147_040 Hb_003147_040 Hb_000429_160--Hb_003147_040 Hb_000659_040 Hb_000659_040 Hb_000429_160--Hb_000659_040 Hb_005408_100 Hb_005408_100 Hb_000109_190--Hb_005408_100 Hb_003001_130 Hb_003001_130 Hb_000109_190--Hb_003001_130 Hb_000479_060 Hb_000479_060 Hb_000109_190--Hb_000479_060 Hb_020805_120 Hb_020805_120 Hb_000109_190--Hb_020805_120 Hb_003929_230 Hb_003929_230 Hb_000109_190--Hb_003929_230 Hb_000365_280 Hb_000365_280 Hb_000109_190--Hb_000365_280 Hb_000676_300 Hb_000676_300 Hb_106552_060--Hb_000676_300 Hb_000367_120 Hb_000367_120 Hb_106552_060--Hb_000367_120 Hb_001541_060 Hb_001541_060 Hb_106552_060--Hb_001541_060 Hb_000742_220 Hb_000742_220 Hb_106552_060--Hb_000742_220 Hb_006570_090 Hb_006570_090 Hb_106552_060--Hb_006570_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0916254 0.945004 0.507169 1.75994 0.365887 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0837104 0.145614 0.137621 1.61047

CAGE analysis