Hb_106552_060

Information

Type -
Description -
Location Contig106552: 13554-14150
Sequence    

Annotation

kegg
ID rcu:RCOM_0820270
description STS14 protein precursor, putative
nr
ID XP_002525217.1
description STS14 protein precursor, putative [Ricinus communis]
swissprot
ID Q40374
description Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1
trembl
ID B9SGU8
description STS14 protein, putative OS=Ricinus communis GN=RCOM_0820270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 045_E07r.ab1: 11368-12839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106552_060 0.0 - - STS14 protein precursor, putative [Ricinus communis]
2 Hb_000676_300 0.1586586284 - - PREDICTED: probable caffeine synthase 4 [Jatropha curcas]
3 Hb_003125_130 0.1973323748 - - hypothetical protein JCGZ_26446 [Jatropha curcas]
4 Hb_000367_120 0.1985046895 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
5 Hb_001541_060 0.2015691822 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000742_220 0.2063034619 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
7 Hb_006570_090 0.2071528105 - - tubulin beta chain, putative [Ricinus communis]
8 Hb_002686_130 0.2075102751 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
9 Hb_004242_090 0.2075473699 - - hypothetical protein JCGZ_00767 [Jatropha curcas]
10 Hb_000108_180 0.2106929718 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
11 Hb_003086_030 0.2122468453 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
12 Hb_005539_140 0.2145095386 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
13 Hb_000098_170 0.2147072688 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
14 Hb_003462_040 0.2168236341 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_030565_050 0.2169222761 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
16 Hb_000236_290 0.2202644863 - - organic anion transporter, putative [Ricinus communis]
17 Hb_058471_010 0.2207938702 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
18 Hb_003006_090 0.2231901731 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
19 Hb_011930_180 0.2254204684 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000236_180 0.2258472322 - - serine hydroxymethyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_106552_060 Hb_106552_060 Hb_000676_300 Hb_000676_300 Hb_106552_060--Hb_000676_300 Hb_003125_130 Hb_003125_130 Hb_106552_060--Hb_003125_130 Hb_000367_120 Hb_000367_120 Hb_106552_060--Hb_000367_120 Hb_001541_060 Hb_001541_060 Hb_106552_060--Hb_001541_060 Hb_000742_220 Hb_000742_220 Hb_106552_060--Hb_000742_220 Hb_006570_090 Hb_006570_090 Hb_106552_060--Hb_006570_090 Hb_000676_300--Hb_000742_220 Hb_000300_520 Hb_000300_520 Hb_000676_300--Hb_000300_520 Hb_000236_180 Hb_000236_180 Hb_000676_300--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000676_300--Hb_000417_380 Hb_000077_100 Hb_000077_100 Hb_000676_300--Hb_000077_100 Hb_002820_150 Hb_002820_150 Hb_003125_130--Hb_002820_150 Hb_000230_450 Hb_000230_450 Hb_003125_130--Hb_000230_450 Hb_005725_160 Hb_005725_160 Hb_003125_130--Hb_005725_160 Hb_000429_160 Hb_000429_160 Hb_003125_130--Hb_000429_160 Hb_000109_190 Hb_000109_190 Hb_003125_130--Hb_000109_190 Hb_002097_100 Hb_002097_100 Hb_000367_120--Hb_002097_100 Hb_026549_070 Hb_026549_070 Hb_000367_120--Hb_026549_070 Hb_048476_030 Hb_048476_030 Hb_000367_120--Hb_048476_030 Hb_003582_090 Hb_003582_090 Hb_000367_120--Hb_003582_090 Hb_001195_660 Hb_001195_660 Hb_000367_120--Hb_001195_660 Hb_116702_010 Hb_116702_010 Hb_000367_120--Hb_116702_010 Hb_000108_180 Hb_000108_180 Hb_001541_060--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_001541_060--Hb_150486_010 Hb_000251_120 Hb_000251_120 Hb_001541_060--Hb_000251_120 Hb_001366_110 Hb_001366_110 Hb_001541_060--Hb_001366_110 Hb_003177_040 Hb_003177_040 Hb_001541_060--Hb_003177_040 Hb_000236_230 Hb_000236_230 Hb_001541_060--Hb_000236_230 Hb_011930_180 Hb_011930_180 Hb_000742_220--Hb_011930_180 Hb_004242_090 Hb_004242_090 Hb_000742_220--Hb_004242_090 Hb_119044_010 Hb_119044_010 Hb_000742_220--Hb_119044_010 Hb_000193_210 Hb_000193_210 Hb_000742_220--Hb_000193_210 Hb_003097_160 Hb_003097_160 Hb_000742_220--Hb_003097_160 Hb_001357_050 Hb_001357_050 Hb_000742_220--Hb_001357_050 Hb_000049_270 Hb_000049_270 Hb_006570_090--Hb_000049_270 Hb_012807_150 Hb_012807_150 Hb_006570_090--Hb_012807_150 Hb_004007_070 Hb_004007_070 Hb_006570_090--Hb_004007_070 Hb_134014_010 Hb_134014_010 Hb_006570_090--Hb_134014_010 Hb_000603_020 Hb_000603_020 Hb_006570_090--Hb_000603_020 Hb_000023_110 Hb_000023_110 Hb_006570_090--Hb_000023_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0876156 0.164007 0.171052 0.794839 0.0823042 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.13973 0.0655957 0.463803

CAGE analysis