Hb_000676_300

Information

Type -
Description -
Location Contig676: 256781-258237
Sequence    

Annotation

kegg
ID rcu:RCOM_0308380
description Jasmonate O-methyltransferase, putative (EC:2.1.1.141)
nr
ID XP_012081494.1
description PREDICTED: probable caffeine synthase 4 [Jatropha curcas]
swissprot
ID Q9AVL9
description Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1
trembl
ID A0A067K1C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18506 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable caffeine synthase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_300 0.0 - - PREDICTED: probable caffeine synthase 4 [Jatropha curcas]
2 Hb_106552_060 0.1586586284 - - STS14 protein precursor, putative [Ricinus communis]
3 Hb_000742_220 0.209719636 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
4 Hb_000300_520 0.2176362633 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
5 Hb_000236_180 0.2202433286 - - serine hydroxymethyltransferase, putative [Ricinus communis]
6 Hb_000417_380 0.2313282563 - - SecY protein transport family protein [Theobroma cacao]
7 Hb_000077_100 0.2332378524 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
8 Hb_007508_050 0.2340472655 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
9 Hb_011310_050 0.2347350923 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
10 Hb_039074_010 0.2369132075 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_001195_090 0.238438255 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
12 Hb_000580_110 0.2428695668 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
13 Hb_001541_060 0.2439118648 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011021_010 0.2451733165 - - kinase, putative [Ricinus communis]
15 Hb_001493_060 0.2453941706 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
16 Hb_000236_190 0.2463290427 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
17 Hb_001216_110 0.2463877589 - - PREDICTED: protein GPR107-like [Jatropha curcas]
18 Hb_006615_230 0.2467099925 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
19 Hb_008790_040 0.2482640383 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
20 Hb_000679_040 0.2482658642 - - Cellulose synthase 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000676_300 Hb_000676_300 Hb_106552_060 Hb_106552_060 Hb_000676_300--Hb_106552_060 Hb_000742_220 Hb_000742_220 Hb_000676_300--Hb_000742_220 Hb_000300_520 Hb_000300_520 Hb_000676_300--Hb_000300_520 Hb_000236_180 Hb_000236_180 Hb_000676_300--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000676_300--Hb_000417_380 Hb_000077_100 Hb_000077_100 Hb_000676_300--Hb_000077_100 Hb_003125_130 Hb_003125_130 Hb_106552_060--Hb_003125_130 Hb_000367_120 Hb_000367_120 Hb_106552_060--Hb_000367_120 Hb_001541_060 Hb_001541_060 Hb_106552_060--Hb_001541_060 Hb_106552_060--Hb_000742_220 Hb_006570_090 Hb_006570_090 Hb_106552_060--Hb_006570_090 Hb_011930_180 Hb_011930_180 Hb_000742_220--Hb_011930_180 Hb_004242_090 Hb_004242_090 Hb_000742_220--Hb_004242_090 Hb_119044_010 Hb_119044_010 Hb_000742_220--Hb_119044_010 Hb_000193_210 Hb_000193_210 Hb_000742_220--Hb_000193_210 Hb_003097_160 Hb_003097_160 Hb_000742_220--Hb_003097_160 Hb_001357_050 Hb_001357_050 Hb_000742_220--Hb_001357_050 Hb_069355_010 Hb_069355_010 Hb_000300_520--Hb_069355_010 Hb_002129_020 Hb_002129_020 Hb_000300_520--Hb_002129_020 Hb_001195_090 Hb_001195_090 Hb_000300_520--Hb_001195_090 Hb_001999_100 Hb_001999_100 Hb_000300_520--Hb_001999_100 Hb_001216_110 Hb_001216_110 Hb_000300_520--Hb_001216_110 Hb_032143_020 Hb_032143_020 Hb_000300_520--Hb_032143_020 Hb_000580_110 Hb_000580_110 Hb_000236_180--Hb_000580_110 Hb_003470_110 Hb_003470_110 Hb_000236_180--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_000236_180--Hb_030565_100 Hb_000236_180--Hb_000417_380 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_000236_180--Hb_000077_100 Hb_000417_380--Hb_000580_110 Hb_036388_010 Hb_036388_010 Hb_000417_380--Hb_036388_010 Hb_189003_070 Hb_189003_070 Hb_000417_380--Hb_189003_070 Hb_000077_310 Hb_000077_310 Hb_000417_380--Hb_000077_310 Hb_003783_050 Hb_003783_050 Hb_000417_380--Hb_003783_050 Hb_000077_100--Hb_030565_100 Hb_029223_040 Hb_029223_040 Hb_000077_100--Hb_029223_040 Hb_000820_110 Hb_000820_110 Hb_000077_100--Hb_000820_110 Hb_000077_100--Hb_000193_210 Hb_000077_100--Hb_000580_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0662004 0.0314908 0.0581993 0.361774 0.0354929 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0631628 0.0955828 0.210751

CAGE analysis