Hb_000367_120

Information

Type transcription factor
Description TF Family: C2H2
Location Contig367: 108522-110162
Sequence    

Annotation

kegg
ID rcu:RCOM_1470470
description hypothetical protein
nr
ID XP_002514689.1
description hypothetical protein RCOM_1470470 [Ricinus communis]
swissprot
ID Q9SHD0
description Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1
trembl
ID B9RLS0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470470 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein zat4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_120 0.0 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
2 Hb_002097_100 0.1554429945 - - protein with unknown function [Ricinus communis]
3 Hb_026549_070 0.1556514892 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
4 Hb_048476_030 0.1557298371 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
5 Hb_003582_090 0.1634885105 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
6 Hb_001195_660 0.1637251888 - - metalloendopeptidase, putative [Ricinus communis]
7 Hb_116702_010 0.1667672838 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
8 Hb_003847_040 0.1671504046 - - adenosine diphosphatase, putative [Ricinus communis]
9 Hb_001049_150 0.169375036 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
10 Hb_000120_530 0.175349241 transcription factor TF Family: C3H RING finger protein 113A, putative [Ricinus communis]
11 Hb_000139_300 0.1832145446 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
12 Hb_002028_180 0.1836446449 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_000062_400 0.1840424478 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009079_050 0.1855417711 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
15 Hb_004306_110 0.1860725456 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
16 Hb_001969_140 0.1877386178 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
17 Hb_000684_390 0.1884546117 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
18 Hb_000466_070 0.188788551 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
19 Hb_003462_040 0.1888538287 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_000000_310 0.1890666549 - - metalloendopeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000367_120 Hb_000367_120 Hb_002097_100 Hb_002097_100 Hb_000367_120--Hb_002097_100 Hb_026549_070 Hb_026549_070 Hb_000367_120--Hb_026549_070 Hb_048476_030 Hb_048476_030 Hb_000367_120--Hb_048476_030 Hb_003582_090 Hb_003582_090 Hb_000367_120--Hb_003582_090 Hb_001195_660 Hb_001195_660 Hb_000367_120--Hb_001195_660 Hb_116702_010 Hb_116702_010 Hb_000367_120--Hb_116702_010 Hb_002097_100--Hb_026549_070 Hb_004306_110 Hb_004306_110 Hb_002097_100--Hb_004306_110 Hb_000815_230 Hb_000815_230 Hb_002097_100--Hb_000815_230 Hb_001847_050 Hb_001847_050 Hb_002097_100--Hb_001847_050 Hb_002053_050 Hb_002053_050 Hb_002097_100--Hb_002053_050 Hb_001579_300 Hb_001579_300 Hb_002097_100--Hb_001579_300 Hb_000139_300 Hb_000139_300 Hb_026549_070--Hb_000139_300 Hb_026549_070--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_026549_070--Hb_009079_050 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_002164_020 Hb_002164_020 Hb_026549_070--Hb_002164_020 Hb_026549_070--Hb_001195_660 Hb_048476_030--Hb_003582_090 Hb_048476_030--Hb_001195_660 Hb_048476_030--Hb_003847_040 Hb_000025_540 Hb_000025_540 Hb_048476_030--Hb_000025_540 Hb_000120_530 Hb_000120_530 Hb_048476_030--Hb_000120_530 Hb_000445_370 Hb_000445_370 Hb_003582_090--Hb_000445_370 Hb_002675_080 Hb_002675_080 Hb_003582_090--Hb_002675_080 Hb_003582_090--Hb_001195_660 Hb_000042_050 Hb_000042_050 Hb_003582_090--Hb_000042_050 Hb_001053_020 Hb_001053_020 Hb_003582_090--Hb_001053_020 Hb_003582_090--Hb_003847_040 Hb_001195_660--Hb_003847_040 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_001195_660--Hb_009079_050 Hb_001195_660--Hb_000139_300 Hb_000000_310 Hb_000000_310 Hb_116702_010--Hb_000000_310 Hb_000138_060 Hb_000138_060 Hb_116702_010--Hb_000138_060 Hb_116702_010--Hb_026549_070 Hb_005192_010 Hb_005192_010 Hb_116702_010--Hb_005192_010 Hb_001969_140 Hb_001969_140 Hb_116702_010--Hb_001969_140 Hb_011828_010 Hb_011828_010 Hb_116702_010--Hb_011828_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.836903 1.34851 2.61846 4.81402 1.07004 0.299951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225436 0.155194 1.75518 0.300537 4.2358

CAGE analysis