Hb_000120_530

Information

Type transcription factor
Description TF Family: C3H
Location Contig120: 408327-409059
Sequence    

Annotation

kegg
ID rcu:RCOM_0693420
description RING finger protein 113A, putative
nr
ID XP_002522169.1
description RING finger protein 113A, putative [Ricinus communis]
swissprot
ID Q8GX84
description Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2
trembl
ID B9S849
description RING finger protein 113A, putative OS=Ricinus communis GN=RCOM_0693420 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_530 0.0 transcription factor TF Family: C3H RING finger protein 113A, putative [Ricinus communis]
2 Hb_002603_040 0.1269981759 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
3 Hb_000138_060 0.1462430188 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
4 Hb_001969_140 0.1487588371 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
5 Hb_000997_070 0.1544349268 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
6 Hb_003540_080 0.1553848611 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_001411_130 0.1572610126 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
8 Hb_001754_020 0.1578458573 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
9 Hb_011828_010 0.1581167878 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
10 Hb_116702_010 0.1582135967 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
11 Hb_000638_060 0.1591136042 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
12 Hb_000922_060 0.1599005891 - - kinesin light chain, putative [Ricinus communis]
13 Hb_011310_050 0.1600631189 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
14 Hb_048476_030 0.161729245 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
15 Hb_000959_300 0.1623497415 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
16 Hb_002217_320 0.1624138057 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
17 Hb_000510_150 0.1624426388 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
18 Hb_000000_310 0.1631878238 - - metalloendopeptidase, putative [Ricinus communis]
19 Hb_012762_060 0.1647302001 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
20 Hb_000035_220 0.1648556102 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_530 Hb_000120_530 Hb_002603_040 Hb_002603_040 Hb_000120_530--Hb_002603_040 Hb_000138_060 Hb_000138_060 Hb_000120_530--Hb_000138_060 Hb_001969_140 Hb_001969_140 Hb_000120_530--Hb_001969_140 Hb_000997_070 Hb_000997_070 Hb_000120_530--Hb_000997_070 Hb_003540_080 Hb_003540_080 Hb_000120_530--Hb_003540_080 Hb_001411_130 Hb_001411_130 Hb_000120_530--Hb_001411_130 Hb_000265_140 Hb_000265_140 Hb_002603_040--Hb_000265_140 Hb_000599_360 Hb_000599_360 Hb_002603_040--Hb_000599_360 Hb_002400_060 Hb_002400_060 Hb_002603_040--Hb_002400_060 Hb_000085_260 Hb_000085_260 Hb_002603_040--Hb_000085_260 Hb_001754_020 Hb_001754_020 Hb_002603_040--Hb_001754_020 Hb_000494_030 Hb_000494_030 Hb_002603_040--Hb_000494_030 Hb_002289_150 Hb_002289_150 Hb_000138_060--Hb_002289_150 Hb_116702_010 Hb_116702_010 Hb_000138_060--Hb_116702_010 Hb_011828_010 Hb_011828_010 Hb_000138_060--Hb_011828_010 Hb_001347_050 Hb_001347_050 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_005192_010 Hb_005192_010 Hb_000138_060--Hb_005192_010 Hb_001195_310 Hb_001195_310 Hb_001969_140--Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_001969_140--Hb_000167_040 Hb_001216_110 Hb_001216_110 Hb_001969_140--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_001969_140--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_001969_140--Hb_011310_050 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_000562_100 Hb_000562_100 Hb_000997_070--Hb_000562_100 Hb_000997_070--Hb_000167_040 Hb_000997_070--Hb_001195_310 Hb_010381_020 Hb_010381_020 Hb_000997_070--Hb_010381_020 Hb_000997_070--Hb_001969_140 Hb_000418_020 Hb_000418_020 Hb_000997_070--Hb_000418_020 Hb_000035_220 Hb_000035_220 Hb_003540_080--Hb_000035_220 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_002942_230 Hb_002942_230 Hb_003540_080--Hb_002942_230 Hb_000510_150 Hb_000510_150 Hb_003540_080--Hb_000510_150 Hb_000258_220 Hb_000258_220 Hb_003540_080--Hb_000258_220 Hb_000665_170 Hb_000665_170 Hb_003540_080--Hb_000665_170 Hb_001411_130--Hb_002942_230 Hb_001279_020 Hb_001279_020 Hb_001411_130--Hb_001279_020 Hb_003847_040 Hb_003847_040 Hb_001411_130--Hb_003847_040 Hb_001411_130--Hb_000959_300 Hb_002217_080 Hb_002217_080 Hb_001411_130--Hb_002217_080 Hb_029552_020 Hb_029552_020 Hb_001411_130--Hb_029552_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.219071 0.388776 0.476816 0.945072 0.168017 0.166261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10023 0 0.275746 0.226064 0.610262

CAGE analysis