Hb_002820_150

Information

Type -
Description -
Location Contig2820: 109382-118504
Sequence    

Annotation

kegg
ID rcu:RCOM_1031870
description zinc finger protein, putative
nr
ID XP_002513785.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID B9RJ66
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1031870 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase ring1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29549: 110189-110798
cDNA
(Sanger)
(ID:Location)		 011_E04r.ab1: 112856-117810

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_150 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_003462_040 0.1211664469 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_003929_240 0.1412335398 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
4 Hb_000117_030 0.149258629 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
5 Hb_006750_010 0.1570362212 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
6 Hb_000094_170 0.1611953201 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
7 Hb_004242_090 0.1628594542 - - hypothetical protein JCGZ_00767 [Jatropha curcas]
8 Hb_019516_060 0.1681827302 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
9 Hb_000056_190 0.1683972367 - - hypothetical protein [Ricinus communis]
10 Hb_001008_080 0.172633775 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
11 Hb_000056_110 0.1728234945 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
12 Hb_001001_070 0.1734866212 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
13 Hb_032631_020 0.1737228255 - - glycine-rich family protein [Populus trichocarpa]
14 Hb_002999_070 0.1739993171 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
15 Hb_001789_100 0.1744104526 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001195_380 0.1745155942 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
17 Hb_003006_090 0.1749145537 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
18 Hb_001369_010 0.1781553473 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
19 Hb_105033_010 0.1812411527 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_006569_080 0.1818226747 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]

Gene co-expression network

sample Hb_002820_150 Hb_002820_150 Hb_003462_040 Hb_003462_040 Hb_002820_150--Hb_003462_040 Hb_003929_240 Hb_003929_240 Hb_002820_150--Hb_003929_240 Hb_000117_030 Hb_000117_030 Hb_002820_150--Hb_000117_030 Hb_006750_010 Hb_006750_010 Hb_002820_150--Hb_006750_010 Hb_000094_170 Hb_000094_170 Hb_002820_150--Hb_000094_170 Hb_004242_090 Hb_004242_090 Hb_002820_150--Hb_004242_090 Hb_001369_010 Hb_001369_010 Hb_003462_040--Hb_001369_010 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_019516_060 Hb_019516_060 Hb_003462_040--Hb_019516_060 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_003462_040--Hb_001195_660 Hb_001257_050 Hb_001257_050 Hb_003929_240--Hb_001257_050 Hb_000005_370 Hb_000005_370 Hb_003929_240--Hb_000005_370 Hb_003018_150 Hb_003018_150 Hb_003929_240--Hb_003018_150 Hb_003929_240--Hb_006750_010 Hb_001699_080 Hb_001699_080 Hb_003929_240--Hb_001699_080 Hb_000103_130 Hb_000103_130 Hb_003929_240--Hb_000103_130 Hb_000521_090 Hb_000521_090 Hb_000117_030--Hb_000521_090 Hb_009079_050 Hb_009079_050 Hb_000117_030--Hb_009079_050 Hb_000117_030--Hb_003462_040 Hb_012799_190 Hb_012799_190 Hb_000117_030--Hb_012799_190 Hb_000117_030--Hb_003226_250 Hb_000270_660 Hb_000270_660 Hb_000117_030--Hb_000270_660 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_006750_010--Hb_001369_010 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_006750_010--Hb_019516_060 Hb_001001_070 Hb_001001_070 Hb_000094_170--Hb_001001_070 Hb_008762_010 Hb_008762_010 Hb_000094_170--Hb_008762_010 Hb_001789_100 Hb_001789_100 Hb_000094_170--Hb_001789_100 Hb_001141_250 Hb_001141_250 Hb_000094_170--Hb_001141_250 Hb_002081_020 Hb_002081_020 Hb_000094_170--Hb_002081_020 Hb_005914_120 Hb_005914_120 Hb_000094_170--Hb_005914_120 Hb_001278_020 Hb_001278_020 Hb_004242_090--Hb_001278_020 Hb_002999_070 Hb_002999_070 Hb_004242_090--Hb_002999_070 Hb_001486_280 Hb_001486_280 Hb_004242_090--Hb_001486_280 Hb_004242_090--Hb_003929_240 Hb_004375_120 Hb_004375_120 Hb_004242_090--Hb_004375_120 Hb_004242_090--Hb_003462_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.514875 1.28037 1.50327 5.45193 0.688384 0.0748476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.272317 0.397827 0.0570286 0.220519 5.07636

CAGE analysis