Hb_003014_020

Information

Type -
Description -
Location Contig3014: 95613-96920
Sequence    

Annotation

kegg
ID rcu:RCOM_0855370
description electron transporter, putative
nr
ID XP_002517496.1
description electron transporter, putative [Ricinus communis]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID B9RUQ1
description Electron transporter, putative OS=Ricinus communis GN=RCOM_0855370 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31735: 94991-95510 , PASA_asmbl_31736: 95643-96356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003014_020 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_004450_050 0.2113426637 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
3 Hb_024682_020 0.2126636815 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
4 Hb_000891_030 0.2153943089 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
5 Hb_010519_040 0.223887925 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
6 Hb_091889_020 0.22510219 - - -
7 Hb_006441_020 0.2310831445 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
8 Hb_006909_060 0.2328191822 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
9 Hb_006788_140 0.2376076819 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
10 Hb_001507_030 0.2382224833 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
11 Hb_000486_070 0.2383687644 - - hypothetical protein JCGZ_25069 [Jatropha curcas]
12 Hb_000983_080 0.2405849366 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
13 Hb_000649_130 0.2410977765 - - Polcalcin Jun o, putative [Ricinus communis]
14 Hb_001944_020 0.2416329626 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
15 Hb_000649_150 0.2419554573 - - PREDICTED: uncharacterized protein LOC105634115 [Jatropha curcas]
16 Hb_084849_010 0.242014473 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002759_260 0.2424397571 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
18 Hb_001433_140 0.2440075709 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
19 Hb_005146_080 0.244113683 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
20 Hb_000042_330 0.2453467601 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003014_020 Hb_003014_020 Hb_004450_050 Hb_004450_050 Hb_003014_020--Hb_004450_050 Hb_024682_020 Hb_024682_020 Hb_003014_020--Hb_024682_020 Hb_000891_030 Hb_000891_030 Hb_003014_020--Hb_000891_030 Hb_010519_040 Hb_010519_040 Hb_003014_020--Hb_010519_040 Hb_091889_020 Hb_091889_020 Hb_003014_020--Hb_091889_020 Hb_006441_020 Hb_006441_020 Hb_003014_020--Hb_006441_020 Hb_001396_110 Hb_001396_110 Hb_004450_050--Hb_001396_110 Hb_009627_030 Hb_009627_030 Hb_004450_050--Hb_009627_030 Hb_000815_240 Hb_000815_240 Hb_004450_050--Hb_000815_240 Hb_005146_080 Hb_005146_080 Hb_004450_050--Hb_005146_080 Hb_005188_030 Hb_005188_030 Hb_004450_050--Hb_005188_030 Hb_004450_050--Hb_006441_020 Hb_034688_020 Hb_034688_020 Hb_024682_020--Hb_034688_020 Hb_005356_040 Hb_005356_040 Hb_024682_020--Hb_005356_040 Hb_000649_240 Hb_000649_240 Hb_024682_020--Hb_000649_240 Hb_001146_010 Hb_001146_010 Hb_024682_020--Hb_001146_010 Hb_002577_010 Hb_002577_010 Hb_024682_020--Hb_002577_010 Hb_010050_050 Hb_010050_050 Hb_024682_020--Hb_010050_050 Hb_002701_220 Hb_002701_220 Hb_000891_030--Hb_002701_220 Hb_011909_140 Hb_011909_140 Hb_000891_030--Hb_011909_140 Hb_000649_130 Hb_000649_130 Hb_000891_030--Hb_000649_130 Hb_000465_510 Hb_000465_510 Hb_000891_030--Hb_000465_510 Hb_006615_080 Hb_006615_080 Hb_000891_030--Hb_006615_080 Hb_001507_030 Hb_001507_030 Hb_000891_030--Hb_001507_030 Hb_007943_050 Hb_007943_050 Hb_010519_040--Hb_007943_050 Hb_001221_220 Hb_001221_220 Hb_010519_040--Hb_001221_220 Hb_000210_010 Hb_000210_010 Hb_010519_040--Hb_000210_010 Hb_009545_090 Hb_009545_090 Hb_010519_040--Hb_009545_090 Hb_005867_090 Hb_005867_090 Hb_010519_040--Hb_005867_090 Hb_000342_060 Hb_000342_060 Hb_010519_040--Hb_000342_060 Hb_000813_160 Hb_000813_160 Hb_091889_020--Hb_000813_160 Hb_011618_100 Hb_011618_100 Hb_091889_020--Hb_011618_100 Hb_003911_030 Hb_003911_030 Hb_091889_020--Hb_003911_030 Hb_000913_080 Hb_000913_080 Hb_091889_020--Hb_000913_080 Hb_000649_150 Hb_000649_150 Hb_091889_020--Hb_000649_150 Hb_168319_010 Hb_168319_010 Hb_091889_020--Hb_168319_010 Hb_013057_020 Hb_013057_020 Hb_006441_020--Hb_013057_020 Hb_006922_050 Hb_006922_050 Hb_006441_020--Hb_006922_050 Hb_006441_020--Hb_005188_030 Hb_002307_270 Hb_002307_270 Hb_006441_020--Hb_002307_270 Hb_017387_010 Hb_017387_010 Hb_006441_020--Hb_017387_010 Hb_002915_060 Hb_002915_060 Hb_006441_020--Hb_002915_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.57144 11.6605 2.37309 13.4775 0.432642 0.425685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31855 9.73865 5.22085 3.23841 2.69555

CAGE analysis