Hb_002876_350

Information

Type -
Description -
Location Contig2876: 313925-314919
Sequence    

Annotation

kegg
ID tcc:TCM_036348
description hypothetical protein
nr
ID XP_006473196.1
description PREDICTED: gibberellin-regulated protein 9-like isoform X2 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A061FRS8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_036348 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30064: 313375-314985
cDNA
(Sanger)
(ID:Location)		 025_E24.ab1: 313715-314982 , 036_K10.ab1: 313828-314982

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_350 0.0 - - PREDICTED: gibberellin-regulated protein 9-like isoform X2 [Citrus sinensis]
2 Hb_004195_130 0.1233701182 - - PREDICTED: thioredoxin domain-containing protein PLP3B [Sesamum indicum]
3 Hb_000107_030 0.1345099178 - - conserved hypothetical protein [Ricinus communis]
4 Hb_022132_010 0.1363021157 - - unknown [Medicago truncatula]
5 Hb_001377_030 0.1413886472 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
6 Hb_007101_160 0.1504390902 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004122_040 0.15577266 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
8 Hb_001699_210 0.1557991981 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
9 Hb_000000_360 0.1571602624 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
10 Hb_010315_060 0.1573334189 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
11 Hb_004449_170 0.1575324386 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
12 Hb_000836_170 0.1581534906 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
13 Hb_058972_010 0.1581834023 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
14 Hb_003050_110 0.1585823153 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
15 Hb_003579_050 0.1587282955 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
16 Hb_001195_260 0.1593305851 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
17 Hb_012016_010 0.1603341039 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
18 Hb_001329_290 0.1628405905 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
19 Hb_005588_030 0.163488643 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
20 Hb_001476_070 0.1638762756 - - MinE protein [Manihot esculenta]

Gene co-expression network

sample Hb_002876_350 Hb_002876_350 Hb_004195_130 Hb_004195_130 Hb_002876_350--Hb_004195_130 Hb_000107_030 Hb_000107_030 Hb_002876_350--Hb_000107_030 Hb_022132_010 Hb_022132_010 Hb_002876_350--Hb_022132_010 Hb_001377_030 Hb_001377_030 Hb_002876_350--Hb_001377_030 Hb_007101_160 Hb_007101_160 Hb_002876_350--Hb_007101_160 Hb_004122_040 Hb_004122_040 Hb_002876_350--Hb_004122_040 Hb_004195_130--Hb_004122_040 Hb_001579_230 Hb_001579_230 Hb_004195_130--Hb_001579_230 Hb_000331_060 Hb_000331_060 Hb_004195_130--Hb_000331_060 Hb_004195_130--Hb_000107_030 Hb_058972_010 Hb_058972_010 Hb_004195_130--Hb_058972_010 Hb_000836_170 Hb_000836_170 Hb_004195_130--Hb_000836_170 Hb_005588_030 Hb_005588_030 Hb_000107_030--Hb_005588_030 Hb_003579_050 Hb_003579_050 Hb_000107_030--Hb_003579_050 Hb_005144_090 Hb_005144_090 Hb_000107_030--Hb_005144_090 Hb_000107_030--Hb_000836_170 Hb_001186_090 Hb_001186_090 Hb_000107_030--Hb_001186_090 Hb_073973_130 Hb_073973_130 Hb_000107_030--Hb_073973_130 Hb_004363_010 Hb_004363_010 Hb_022132_010--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_022132_010--Hb_000976_260 Hb_002026_140 Hb_002026_140 Hb_022132_010--Hb_002026_140 Hb_002639_150 Hb_002639_150 Hb_022132_010--Hb_002639_150 Hb_002292_010 Hb_002292_010 Hb_022132_010--Hb_002292_010 Hb_000012_020 Hb_000012_020 Hb_022132_010--Hb_000012_020 Hb_003050_110 Hb_003050_110 Hb_001377_030--Hb_003050_110 Hb_002450_040 Hb_002450_040 Hb_001377_030--Hb_002450_040 Hb_000000_360 Hb_000000_360 Hb_001377_030--Hb_000000_360 Hb_140833_010 Hb_140833_010 Hb_001377_030--Hb_140833_010 Hb_004934_030 Hb_004934_030 Hb_001377_030--Hb_004934_030 Hb_000260_800 Hb_000260_800 Hb_001377_030--Hb_000260_800 Hb_000424_020 Hb_000424_020 Hb_007101_160--Hb_000424_020 Hb_000390_310 Hb_000390_310 Hb_007101_160--Hb_000390_310 Hb_000958_130 Hb_000958_130 Hb_007101_160--Hb_000958_130 Hb_000436_100 Hb_000436_100 Hb_007101_160--Hb_000436_100 Hb_001956_040 Hb_001956_040 Hb_007101_160--Hb_001956_040 Hb_007313_090 Hb_007313_090 Hb_007101_160--Hb_007313_090 Hb_004122_040--Hb_000331_060 Hb_002119_080 Hb_002119_080 Hb_004122_040--Hb_002119_080 Hb_004122_040--Hb_058972_010 Hb_001195_260 Hb_001195_260 Hb_004122_040--Hb_001195_260 Hb_000107_190 Hb_000107_190 Hb_004122_040--Hb_000107_190 Hb_010315_060 Hb_010315_060 Hb_004122_040--Hb_010315_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.226 3.1127 19.7523 4.51033 14.0155 7.40566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.15641 15.4982 2.53535 4.38543 5.46505

CAGE analysis