Hb_022132_010

Information

Type -
Description -
Location Contig22132: 3700-11804
Sequence    

Annotation

kegg
ID bvg:104890871
description Werner Syndrome-like exonuclease
nr
ID AFK45895.1
description unknown [Medicago truncatula]
swissprot
ID Q8VEG4
description Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus GN=Exd2 PE=2 SV=1
trembl
ID A0A0A9PNQ3
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0003676
description werner syndrome-like exonuclease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022132_010 0.0 - - unknown [Medicago truncatula]
2 Hb_004363_010 0.1042758669 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
3 Hb_000976_260 0.1094086741 - - -
4 Hb_002026_140 0.1119629594 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
5 Hb_002639_150 0.1133439143 - - -
6 Hb_002292_010 0.1156574025 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
7 Hb_000012_020 0.116401859 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
8 Hb_058972_010 0.1175840247 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
9 Hb_140833_010 0.1196665592 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
10 Hb_001195_260 0.1205012031 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
11 Hb_001427_050 0.1208942814 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
12 Hb_000392_050 0.1216833175 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
13 Hb_001142_050 0.12215654 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
14 Hb_003050_200 0.1228884174 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
15 Hb_000808_250 0.123245766 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
16 Hb_010968_010 0.1266318476 - - Golgi snare 12 isoform 1 [Theobroma cacao]
17 Hb_006623_020 0.1274280657 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
18 Hb_000261_250 0.1281534059 - - elongation factor 1-alpha [Lepidium sativum]
19 Hb_000661_140 0.1284853152 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
20 Hb_007007_050 0.1295236815 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]

Gene co-expression network

sample Hb_022132_010 Hb_022132_010 Hb_004363_010 Hb_004363_010 Hb_022132_010--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_022132_010--Hb_000976_260 Hb_002026_140 Hb_002026_140 Hb_022132_010--Hb_002026_140 Hb_002639_150 Hb_002639_150 Hb_022132_010--Hb_002639_150 Hb_002292_010 Hb_002292_010 Hb_022132_010--Hb_002292_010 Hb_000012_020 Hb_000012_020 Hb_022132_010--Hb_000012_020 Hb_004363_010--Hb_002292_010 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_008112_040 Hb_008112_040 Hb_004363_010--Hb_008112_040 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_007007_050 Hb_007007_050 Hb_004363_010--Hb_007007_050 Hb_001142_050 Hb_001142_050 Hb_000976_260--Hb_001142_050 Hb_000976_260--Hb_000012_020 Hb_000261_250 Hb_000261_250 Hb_000976_260--Hb_000261_250 Hb_000661_140 Hb_000661_140 Hb_000976_260--Hb_000661_140 Hb_000976_260--Hb_002639_150 Hb_000359_330 Hb_000359_330 Hb_002026_140--Hb_000359_330 Hb_002026_140--Hb_002639_150 Hb_002026_140--Hb_002292_010 Hb_002157_260 Hb_002157_260 Hb_002026_140--Hb_002157_260 Hb_002026_140--Hb_000261_250 Hb_003142_070 Hb_003142_070 Hb_002026_140--Hb_003142_070 Hb_002639_150--Hb_000661_140 Hb_000926_310 Hb_000926_310 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_002292_010--Hb_007007_050 Hb_141532_010 Hb_141532_010 Hb_002292_010--Hb_141532_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002292_010--Hb_002639_150 Hb_002292_010--Hb_003687_230 Hb_000012_020--Hb_001142_050 Hb_003044_100 Hb_003044_100 Hb_000012_020--Hb_003044_100 Hb_000290_020 Hb_000290_020 Hb_000012_020--Hb_000290_020 Hb_000012_020--Hb_002639_150 Hb_000156_140 Hb_000156_140 Hb_000012_020--Hb_000156_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22416 0.303676 1.06185 0.375456 0.967496 0.75973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.369255 0.871433 0.271227 0.22078 0.120738

CAGE analysis