Hb_002301_250

Information

Type -
Description -
Location Contig2301: 258582-264399
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05530g
description hypothetical protein
nr
ID XP_012091642.1
description PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
swissprot
ID Q9FKW0
description Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2
trembl
ID B9N3I0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05530g PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24156: 258508-260198 , PASA_asmbl_24157: 259860-263670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_250 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
2 Hb_132101_010 0.128661714 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
3 Hb_000702_060 0.13144078 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000803_120 0.1323576059 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
5 Hb_003227_010 0.1340394784 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
6 Hb_000244_280 0.1442187153 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
7 Hb_003626_050 0.1514882753 - - malic enzyme, putative [Ricinus communis]
8 Hb_010872_040 0.1517330061 - - hypothetical protein F775_31993 [Aegilops tauschii]
9 Hb_000157_070 0.152027859 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
10 Hb_000220_080 0.1556785347 - - kinase, putative [Ricinus communis]
11 Hb_003683_130 0.1563514172 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
12 Hb_000139_140 0.1563762672 - - Acyl-CoA synthetase [Ricinus communis]
13 Hb_000590_070 0.156911588 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
14 Hb_000337_010 0.1604546893 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
15 Hb_153257_010 0.1607166008 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
16 Hb_000271_120 0.163876575 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
17 Hb_000823_010 0.1648603 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
18 Hb_000363_410 0.1653182436 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
19 Hb_004297_090 0.1657731506 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
20 Hb_001474_010 0.1658976738 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_250 Hb_002301_250 Hb_132101_010 Hb_132101_010 Hb_002301_250--Hb_132101_010 Hb_000702_060 Hb_000702_060 Hb_002301_250--Hb_000702_060 Hb_000803_120 Hb_000803_120 Hb_002301_250--Hb_000803_120 Hb_003227_010 Hb_003227_010 Hb_002301_250--Hb_003227_010 Hb_000244_280 Hb_000244_280 Hb_002301_250--Hb_000244_280 Hb_003626_050 Hb_003626_050 Hb_002301_250--Hb_003626_050 Hb_183867_010 Hb_183867_010 Hb_132101_010--Hb_183867_010 Hb_013358_050 Hb_013358_050 Hb_132101_010--Hb_013358_050 Hb_022092_010 Hb_022092_010 Hb_132101_010--Hb_022092_010 Hb_000157_070 Hb_000157_070 Hb_132101_010--Hb_000157_070 Hb_004837_280 Hb_004837_280 Hb_132101_010--Hb_004837_280 Hb_002808_020 Hb_002808_020 Hb_132101_010--Hb_002808_020 Hb_000684_360 Hb_000684_360 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_007575_030 Hb_007575_030 Hb_000803_120--Hb_007575_030 Hb_000309_030 Hb_000309_030 Hb_000803_120--Hb_000309_030 Hb_005694_180 Hb_005694_180 Hb_000803_120--Hb_005694_180 Hb_000661_220 Hb_000661_220 Hb_000803_120--Hb_000661_220 Hb_004297_090 Hb_004297_090 Hb_000803_120--Hb_004297_090 Hb_000567_090 Hb_000567_090 Hb_000803_120--Hb_000567_090 Hb_000220_110 Hb_000220_110 Hb_003227_010--Hb_000220_110 Hb_010872_040 Hb_010872_040 Hb_003227_010--Hb_010872_040 Hb_000139_140 Hb_000139_140 Hb_003227_010--Hb_000139_140 Hb_000235_050 Hb_000235_050 Hb_003227_010--Hb_000235_050 Hb_005970_010 Hb_005970_010 Hb_003227_010--Hb_005970_010 Hb_003227_010--Hb_002808_020 Hb_004129_050 Hb_004129_050 Hb_000244_280--Hb_004129_050 Hb_002235_190 Hb_002235_190 Hb_000244_280--Hb_002235_190 Hb_000244_280--Hb_000702_060 Hb_006717_070 Hb_006717_070 Hb_000244_280--Hb_006717_070 Hb_003607_060 Hb_003607_060 Hb_000244_280--Hb_003607_060 Hb_002213_090 Hb_002213_090 Hb_003626_050--Hb_002213_090 Hb_003626_050--Hb_000157_070 Hb_107298_010 Hb_107298_010 Hb_003626_050--Hb_107298_010 Hb_000505_100 Hb_000505_100 Hb_003626_050--Hb_000505_100 Hb_001500_070 Hb_001500_070 Hb_003626_050--Hb_001500_070 Hb_006829_100 Hb_006829_100 Hb_003626_050--Hb_006829_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.154089 0.994076 1.26491 1.56286 0.156742 0.642934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185804 0.104419 0.315469 2.59619 0.790737

CAGE analysis