Hb_002235_190

Information

Type -
Description -
Location Contig2235: 117003-125830
Sequence    

Annotation

kegg
ID rcu:RCOM_0538000
description hypothetical protein
nr
ID XP_002530016.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GUH7
description CSC1-like protein HYP1 OS=Arabidopsis thaliana GN=HYP1 PE=2 SV=1
trembl
ID B9SVJ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0538000 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein hyp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000401_010 0.133581194 - - SAB, putative [Ricinus communis]
3 Hb_000244_280 0.1356377949 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
4 Hb_000363_410 0.1512645862 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
5 Hb_001488_280 0.1554175459 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
6 Hb_002093_050 0.1603882059 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
7 Hb_000823_010 0.1685656834 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
8 Hb_000120_310 0.1690667461 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
9 Hb_002301_250 0.1711584481 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
10 Hb_000362_110 0.1719429117 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
11 Hb_000235_050 0.1720777482 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002687_060 0.1778622709 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
13 Hb_001369_160 0.1786272942 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
14 Hb_000702_060 0.1787986835 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001900_060 0.1791903699 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
16 Hb_000220_080 0.1793798576 - - kinase, putative [Ricinus communis]
17 Hb_002783_200 0.1795900111 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
18 Hb_153257_010 0.1796275013 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
19 Hb_098315_090 0.1834620612 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
20 Hb_002025_270 0.1835833142 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_190 Hb_002235_190 Hb_000401_010 Hb_000401_010 Hb_002235_190--Hb_000401_010 Hb_000244_280 Hb_000244_280 Hb_002235_190--Hb_000244_280 Hb_000363_410 Hb_000363_410 Hb_002235_190--Hb_000363_410 Hb_001488_280 Hb_001488_280 Hb_002235_190--Hb_001488_280 Hb_002093_050 Hb_002093_050 Hb_002235_190--Hb_002093_050 Hb_000823_010 Hb_000823_010 Hb_002235_190--Hb_000823_010 Hb_000235_050 Hb_000235_050 Hb_000401_010--Hb_000235_050 Hb_003050_150 Hb_003050_150 Hb_000401_010--Hb_003050_150 Hb_000205_280 Hb_000205_280 Hb_000401_010--Hb_000205_280 Hb_000297_030 Hb_000297_030 Hb_000401_010--Hb_000297_030 Hb_002025_270 Hb_002025_270 Hb_000401_010--Hb_002025_270 Hb_004129_050 Hb_004129_050 Hb_000244_280--Hb_004129_050 Hb_000702_060 Hb_000702_060 Hb_000244_280--Hb_000702_060 Hb_002301_250 Hb_002301_250 Hb_000244_280--Hb_002301_250 Hb_006717_070 Hb_006717_070 Hb_000244_280--Hb_006717_070 Hb_003607_060 Hb_003607_060 Hb_000244_280--Hb_003607_060 Hb_052135_020 Hb_052135_020 Hb_000363_410--Hb_052135_020 Hb_002687_060 Hb_002687_060 Hb_000363_410--Hb_002687_060 Hb_004297_090 Hb_004297_090 Hb_000363_410--Hb_004297_090 Hb_005504_030 Hb_005504_030 Hb_000363_410--Hb_005504_030 Hb_000009_140 Hb_000009_140 Hb_000363_410--Hb_000009_140 Hb_000803_120 Hb_000803_120 Hb_000363_410--Hb_000803_120 Hb_000120_310 Hb_000120_310 Hb_001488_280--Hb_000120_310 Hb_009898_030 Hb_009898_030 Hb_001488_280--Hb_009898_030 Hb_002833_020 Hb_002833_020 Hb_001488_280--Hb_002833_020 Hb_000417_280 Hb_000417_280 Hb_001488_280--Hb_000417_280 Hb_000574_370 Hb_000574_370 Hb_001488_280--Hb_000574_370 Hb_005880_010 Hb_005880_010 Hb_001488_280--Hb_005880_010 Hb_153257_010 Hb_153257_010 Hb_002093_050--Hb_153257_010 Hb_004746_010 Hb_004746_010 Hb_002093_050--Hb_004746_010 Hb_000406_090 Hb_000406_090 Hb_002093_050--Hb_000406_090 Hb_098315_090 Hb_098315_090 Hb_002093_050--Hb_098315_090 Hb_002093_050--Hb_000823_010 Hb_002093_050--Hb_000803_120 Hb_000019_170 Hb_000019_170 Hb_000823_010--Hb_000019_170 Hb_000823_010--Hb_153257_010 Hb_000157_070 Hb_000157_070 Hb_000823_010--Hb_000157_070 Hb_001322_180 Hb_001322_180 Hb_000823_010--Hb_001322_180 Hb_003058_200 Hb_003058_200 Hb_000823_010--Hb_003058_200 Hb_000834_230 Hb_000834_230 Hb_000823_010--Hb_000834_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153392 0.57129 0.628657 0.568618 0.301914 0.231288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.050526 0.0132529 0.0758629 1.32054 0.197387

CAGE analysis