Hb_001331_010

Information

Type -
Description -
Location Contig1331: 20043-21278
Sequence    

Annotation

kegg
ID mtr:MTR_7g072490
description Peroxidase
nr
ID KDO49261.1
description hypothetical protein CISIN_1g039303mg, partial [Citrus sinensis]
swissprot
ID Q8GY91
description Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1
trembl
ID A0A067EED8
description Peroxidase (Fragment) OS=Citrus sinensis GN=CISIN_1g039303mg PE=3 SV=1
Gene Ontology
ID GO:0005488
description cationic peroxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09468: 20814-21114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001331_010 0.0 - - hypothetical protein CISIN_1g039303mg, partial [Citrus sinensis]
2 Hb_001538_080 0.1578870585 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
3 Hb_000140_500 0.1592148662 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000621_030 0.1607485327 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
5 Hb_097335_010 0.1611726927 - - abhydrolase domain containing, putative [Ricinus communis]
6 Hb_016093_030 0.1680039918 - - ankyrin repeat protein [Bruguiera gymnorhiza]
7 Hb_000612_090 0.1685647426 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
8 Hb_074197_030 0.174797804 - - unnamed protein product [Vitis vinifera]
9 Hb_002001_030 0.1768843907 - - Plasma membrane ATPase 4 [Gossypium arboreum]
10 Hb_002217_360 0.1774154008 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
11 Hb_001278_090 0.1786762007 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
12 Hb_000445_160 0.1815506866 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
13 Hb_006142_050 0.1816366879 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
14 Hb_003145_010 0.1817975843 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
15 Hb_006075_030 0.1822554761 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
16 Hb_002724_010 0.1827847424 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
17 Hb_011242_010 0.1830415173 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
18 Hb_029879_150 0.186033583 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
19 Hb_002025_070 0.1889418278 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
20 Hb_002890_200 0.1895375787 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_001331_010 Hb_001331_010 Hb_001538_080 Hb_001538_080 Hb_001331_010--Hb_001538_080 Hb_000140_500 Hb_000140_500 Hb_001331_010--Hb_000140_500 Hb_000621_030 Hb_000621_030 Hb_001331_010--Hb_000621_030 Hb_097335_010 Hb_097335_010 Hb_001331_010--Hb_097335_010 Hb_016093_030 Hb_016093_030 Hb_001331_010--Hb_016093_030 Hb_000612_090 Hb_000612_090 Hb_001331_010--Hb_000612_090 Hb_000103_130 Hb_000103_130 Hb_001538_080--Hb_000103_130 Hb_001210_060 Hb_001210_060 Hb_001538_080--Hb_001210_060 Hb_001538_080--Hb_097335_010 Hb_027472_060 Hb_027472_060 Hb_001538_080--Hb_027472_060 Hb_005730_060 Hb_005730_060 Hb_001538_080--Hb_005730_060 Hb_000235_040 Hb_000235_040 Hb_001538_080--Hb_000235_040 Hb_001278_090 Hb_001278_090 Hb_000140_500--Hb_001278_090 Hb_000181_220 Hb_000181_220 Hb_000140_500--Hb_000181_220 Hb_004162_140 Hb_004162_140 Hb_000140_500--Hb_004162_140 Hb_000140_500--Hb_000621_030 Hb_029639_030 Hb_029639_030 Hb_000140_500--Hb_029639_030 Hb_001488_350 Hb_001488_350 Hb_000140_500--Hb_001488_350 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_004881_070 Hb_004881_070 Hb_000621_030--Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_000621_030--Hb_162174_010 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_004374_160 Hb_004374_160 Hb_000621_030--Hb_004374_160 Hb_004116_050 Hb_004116_050 Hb_000621_030--Hb_004116_050 Hb_002724_010 Hb_002724_010 Hb_097335_010--Hb_002724_010 Hb_030827_010 Hb_030827_010 Hb_097335_010--Hb_030827_010 Hb_003145_010 Hb_003145_010 Hb_097335_010--Hb_003145_010 Hb_000977_020 Hb_000977_020 Hb_097335_010--Hb_000977_020 Hb_003835_080 Hb_003835_080 Hb_097335_010--Hb_003835_080 Hb_000329_440 Hb_000329_440 Hb_016093_030--Hb_000329_440 Hb_060253_010 Hb_060253_010 Hb_016093_030--Hb_060253_010 Hb_005569_010 Hb_005569_010 Hb_016093_030--Hb_005569_010 Hb_001491_070 Hb_001491_070 Hb_016093_030--Hb_001491_070 Hb_000984_160 Hb_000984_160 Hb_016093_030--Hb_000984_160 Hb_131876_010 Hb_131876_010 Hb_016093_030--Hb_131876_010 Hb_002662_110 Hb_002662_110 Hb_000612_090--Hb_002662_110 Hb_074197_030 Hb_074197_030 Hb_000612_090--Hb_074197_030 Hb_002235_110 Hb_002235_110 Hb_000612_090--Hb_002235_110 Hb_000441_050 Hb_000441_050 Hb_000612_090--Hb_000441_050 Hb_002817_040 Hb_002817_040 Hb_000612_090--Hb_002817_040 Hb_005977_060 Hb_005977_060 Hb_000612_090--Hb_005977_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0644284 0.725999 0.851282 0 0.0905159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.112464 0.281775 1.24664

CAGE analysis