Hb_000487_200

Information

Type -
Description -
Location Contig487: 195613-197343
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45009: 191896-195180 , PASA_asmbl_45010: 195891-197506 , PASA_asmbl_45011: 195891-199038 , PASA_asmbl_45012: 195906-199038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_200 0.0 - - -
2 Hb_004223_160 0.0994253996 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
3 Hb_000003_410 0.1000765837 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
4 Hb_001085_030 0.1015448062 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
5 Hb_009476_090 0.1054676513 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
6 Hb_011202_030 0.1056666338 - - arsenite-resistance protein, putative [Ricinus communis]
7 Hb_005701_050 0.1070281676 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
8 Hb_004551_020 0.107387768 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
9 Hb_001133_030 0.1085129618 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
10 Hb_116349_130 0.1090005889 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
11 Hb_005765_040 0.1092923695 - - transcription elongation factor s-II, putative [Ricinus communis]
12 Hb_000196_060 0.1094365982 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
13 Hb_000664_120 0.109651224 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
14 Hb_000265_090 0.1106900506 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
15 Hb_001951_170 0.1107158029 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
16 Hb_021596_010 0.1112912208 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
17 Hb_002918_320 0.1121029975 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
18 Hb_000703_130 0.1121695169 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
19 Hb_012368_100 0.1127314671 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
20 Hb_001221_090 0.1131379544 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000487_200 Hb_000487_200 Hb_004223_160 Hb_004223_160 Hb_000487_200--Hb_004223_160 Hb_000003_410 Hb_000003_410 Hb_000487_200--Hb_000003_410 Hb_001085_030 Hb_001085_030 Hb_000487_200--Hb_001085_030 Hb_009476_090 Hb_009476_090 Hb_000487_200--Hb_009476_090 Hb_011202_030 Hb_011202_030 Hb_000487_200--Hb_011202_030 Hb_005701_050 Hb_005701_050 Hb_000487_200--Hb_005701_050 Hb_005832_010 Hb_005832_010 Hb_004223_160--Hb_005832_010 Hb_001953_120 Hb_001953_120 Hb_004223_160--Hb_001953_120 Hb_001951_170 Hb_001951_170 Hb_004223_160--Hb_001951_170 Hb_004223_160--Hb_009476_090 Hb_001904_030 Hb_001904_030 Hb_004223_160--Hb_001904_030 Hb_003142_040 Hb_003142_040 Hb_004223_160--Hb_003142_040 Hb_000958_050 Hb_000958_050 Hb_000003_410--Hb_000958_050 Hb_001133_030 Hb_001133_030 Hb_000003_410--Hb_001133_030 Hb_000934_210 Hb_000934_210 Hb_000003_410--Hb_000934_210 Hb_003216_090 Hb_003216_090 Hb_000003_410--Hb_003216_090 Hb_021596_010 Hb_021596_010 Hb_000003_410--Hb_021596_010 Hb_000009_410 Hb_000009_410 Hb_000003_410--Hb_000009_410 Hb_001085_030--Hb_001133_030 Hb_000261_150 Hb_000261_150 Hb_001085_030--Hb_000261_150 Hb_000925_090 Hb_000925_090 Hb_001085_030--Hb_000925_090 Hb_000083_070 Hb_000083_070 Hb_001085_030--Hb_000083_070 Hb_007120_060 Hb_007120_060 Hb_001085_030--Hb_007120_060 Hb_014497_020 Hb_014497_020 Hb_001085_030--Hb_014497_020 Hb_000377_050 Hb_000377_050 Hb_009476_090--Hb_000377_050 Hb_009476_090--Hb_005832_010 Hb_000703_130 Hb_000703_130 Hb_009476_090--Hb_000703_130 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_001959_270 Hb_001959_270 Hb_009476_090--Hb_001959_270 Hb_001221_090 Hb_001221_090 Hb_011202_030--Hb_001221_090 Hb_007283_030 Hb_007283_030 Hb_011202_030--Hb_007283_030 Hb_011202_030--Hb_001904_030 Hb_044486_040 Hb_044486_040 Hb_011202_030--Hb_044486_040 Hb_155159_010 Hb_155159_010 Hb_011202_030--Hb_155159_010 Hb_011202_030--Hb_009476_090 Hb_000664_120 Hb_000664_120 Hb_005701_050--Hb_000664_120 Hb_005701_050--Hb_000958_050 Hb_012055_110 Hb_012055_110 Hb_005701_050--Hb_012055_110 Hb_000996_020 Hb_000996_020 Hb_005701_050--Hb_000996_020 Hb_005701_050--Hb_000934_210 Hb_000206_160 Hb_000206_160 Hb_005701_050--Hb_000206_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36341 6.05422 2.52345 2.38641 2.3841 2.31709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.289 1.38697 1.1991 3.67243 4.29271

CAGE analysis