Hb_000246_150

Information

Type -
Description -
Location Contig246: 268266-285405
Sequence    

Annotation

kegg
ID rcu:RCOM_1584740
description hypothetical protein
nr
ID XP_012068385.1
description PREDICTED: protein FAM135B [Jatropha curcas]
swissprot
ID Q9DAI6
description Protein FAM135B OS=Mus musculus GN=Fam135b PE=2 SV=3
trembl
ID B9R6R9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1584740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25599: 269039-276518 , PASA_asmbl_25600: 283886-284169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000246_150 0.0 - - PREDICTED: protein FAM135B [Jatropha curcas]
2 Hb_002281_020 0.1310125464 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
3 Hb_000365_010 0.1315312874 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
4 Hb_001053_060 0.1422242901 - - DHHC-type zinc finger family protein [Theobroma cacao]
5 Hb_004216_060 0.1435335304 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001625_020 0.1444332614 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
7 Hb_007904_300 0.1448661819 - - copine, putative [Ricinus communis]
8 Hb_001105_100 0.1460336704 - - PREDICTED: cathepsin B [Jatropha curcas]
9 Hb_000684_500 0.1468464122 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_000035_350 0.1508995362 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
11 Hb_011224_050 0.1516054841 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
12 Hb_171718_010 0.1528928982 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
13 Hb_001301_280 0.1534582686 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002445_030 0.1538321134 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
15 Hb_002534_130 0.1546516718 - - membrane associated ring finger 1,8, putative [Ricinus communis]
16 Hb_004957_030 0.1551505146 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
17 Hb_081599_010 0.1552079087 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002615_030 0.155212752 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
19 Hb_005946_150 0.1552848934 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
20 Hb_015099_030 0.1563796318 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]

Gene co-expression network

sample Hb_000246_150 Hb_000246_150 Hb_002281_020 Hb_002281_020 Hb_000246_150--Hb_002281_020 Hb_000365_010 Hb_000365_010 Hb_000246_150--Hb_000365_010 Hb_001053_060 Hb_001053_060 Hb_000246_150--Hb_001053_060 Hb_004216_060 Hb_004216_060 Hb_000246_150--Hb_004216_060 Hb_001625_020 Hb_001625_020 Hb_000246_150--Hb_001625_020 Hb_007904_300 Hb_007904_300 Hb_000246_150--Hb_007904_300 Hb_003440_020 Hb_003440_020 Hb_002281_020--Hb_003440_020 Hb_008375_010 Hb_008375_010 Hb_002281_020--Hb_008375_010 Hb_002486_080 Hb_002486_080 Hb_002281_020--Hb_002486_080 Hb_007416_110 Hb_007416_110 Hb_002281_020--Hb_007416_110 Hb_000585_110 Hb_000585_110 Hb_002281_020--Hb_000585_110 Hb_001301_280 Hb_001301_280 Hb_002281_020--Hb_001301_280 Hb_000909_080 Hb_000909_080 Hb_000365_010--Hb_000909_080 Hb_000365_010--Hb_001301_280 Hb_000358_020 Hb_000358_020 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_011224_050 Hb_011224_050 Hb_000365_010--Hb_011224_050 Hb_001951_060 Hb_001951_060 Hb_000365_010--Hb_001951_060 Hb_001017_030 Hb_001017_030 Hb_001053_060--Hb_001017_030 Hb_000680_010 Hb_000680_010 Hb_001053_060--Hb_000680_010 Hb_002684_020 Hb_002684_020 Hb_001053_060--Hb_002684_020 Hb_000398_170 Hb_000398_170 Hb_001053_060--Hb_000398_170 Hb_000320_190 Hb_000320_190 Hb_001053_060--Hb_000320_190 Hb_021596_020 Hb_021596_020 Hb_001053_060--Hb_021596_020 Hb_002477_290 Hb_002477_290 Hb_004216_060--Hb_002477_290 Hb_006059_030 Hb_006059_030 Hb_004216_060--Hb_006059_030 Hb_000364_050 Hb_000364_050 Hb_004216_060--Hb_000364_050 Hb_001269_130 Hb_001269_130 Hb_004216_060--Hb_001269_130 Hb_000210_060 Hb_000210_060 Hb_004216_060--Hb_000210_060 Hb_002173_070 Hb_002173_070 Hb_004216_060--Hb_002173_070 Hb_000684_500 Hb_000684_500 Hb_001625_020--Hb_000684_500 Hb_015099_030 Hb_015099_030 Hb_001625_020--Hb_015099_030 Hb_007955_050 Hb_007955_050 Hb_001625_020--Hb_007955_050 Hb_002126_030 Hb_002126_030 Hb_001625_020--Hb_002126_030 Hb_004544_040 Hb_004544_040 Hb_001625_020--Hb_004544_040 Hb_001625_020--Hb_007904_300 Hb_006824_010 Hb_006824_010 Hb_007904_300--Hb_006824_010 Hb_008948_020 Hb_008948_020 Hb_007904_300--Hb_008948_020 Hb_000059_240 Hb_000059_240 Hb_007904_300--Hb_000059_240 Hb_000535_050 Hb_000535_050 Hb_007904_300--Hb_000535_050 Hb_000139_080 Hb_000139_080 Hb_007904_300--Hb_000139_080 Hb_007904_300--Hb_000684_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.199729 0.420154 0.71781 0.774129 0.00774155 0.455351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225328 0.443261 0.337604 0.604592 0.721409

CAGE analysis