Hb_001625_020

Information

Type -
Description -
Location Contig1625: 22922-27765
Sequence    

Annotation

kegg
ID rcu:RCOM_1682340
description splicing factor yt521-B, putative
nr
ID XP_012087048.1
description PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
swissprot
ID Q0DA50
description Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1
trembl
ID A0A067K177
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20705 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001625_020 0.0 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
2 Hb_000684_500 0.0995735421 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_015099_030 0.1337117613 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
4 Hb_007955_050 0.1390677469 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
5 Hb_002126_030 0.1412825124 - - ferrochelatase, putative [Ricinus communis]
6 Hb_004544_040 0.1419575956 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
7 Hb_007904_300 0.1426243913 - - copine, putative [Ricinus communis]
8 Hb_005116_110 0.1427272256 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
9 Hb_084994_010 0.143314694 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
10 Hb_007413_010 0.1439394576 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
11 Hb_000699_150 0.1444301436 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
12 Hb_000246_150 0.1444332614 - - PREDICTED: protein FAM135B [Jatropha curcas]
13 Hb_000664_020 0.1450799169 - - tryptophanyl-tRNA synthetase, putative [Ricinus communis]
14 Hb_001776_020 0.1452175733 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
15 Hb_011224_050 0.1460976719 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
16 Hb_000169_020 0.147615737 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
17 Hb_004957_030 0.1484039737 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
18 Hb_001408_110 0.1498529375 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
19 Hb_001241_010 0.1507802428 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_021374_010 0.1509580063 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]

Gene co-expression network

sample Hb_001625_020 Hb_001625_020 Hb_000684_500 Hb_000684_500 Hb_001625_020--Hb_000684_500 Hb_015099_030 Hb_015099_030 Hb_001625_020--Hb_015099_030 Hb_007955_050 Hb_007955_050 Hb_001625_020--Hb_007955_050 Hb_002126_030 Hb_002126_030 Hb_001625_020--Hb_002126_030 Hb_004544_040 Hb_004544_040 Hb_001625_020--Hb_004544_040 Hb_007904_300 Hb_007904_300 Hb_001625_020--Hb_007904_300 Hb_000684_500--Hb_007904_300 Hb_000367_090 Hb_000367_090 Hb_000684_500--Hb_000367_090 Hb_008948_020 Hb_008948_020 Hb_000684_500--Hb_008948_020 Hb_004705_170 Hb_004705_170 Hb_000684_500--Hb_004705_170 Hb_000699_150 Hb_000699_150 Hb_000684_500--Hb_000699_150 Hb_000684_500--Hb_015099_030 Hb_004957_030 Hb_004957_030 Hb_015099_030--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_015099_030--Hb_007545_010 Hb_002006_150 Hb_002006_150 Hb_015099_030--Hb_002006_150 Hb_002774_190 Hb_002774_190 Hb_015099_030--Hb_002774_190 Hb_012733_040 Hb_012733_040 Hb_015099_030--Hb_012733_040 Hb_002883_030 Hb_002883_030 Hb_015099_030--Hb_002883_030 Hb_000795_040 Hb_000795_040 Hb_007955_050--Hb_000795_040 Hb_000996_020 Hb_000996_020 Hb_007955_050--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_007955_050--Hb_000373_170 Hb_001925_060 Hb_001925_060 Hb_007955_050--Hb_001925_060 Hb_000189_600 Hb_000189_600 Hb_007955_050--Hb_000189_600 Hb_000661_120 Hb_000661_120 Hb_007955_050--Hb_000661_120 Hb_002126_030--Hb_000699_150 Hb_004333_040 Hb_004333_040 Hb_002126_030--Hb_004333_040 Hb_011674_040 Hb_011674_040 Hb_002126_030--Hb_011674_040 Hb_000072_170 Hb_000072_170 Hb_002126_030--Hb_000072_170 Hb_007413_010 Hb_007413_010 Hb_002126_030--Hb_007413_010 Hb_113853_010 Hb_113853_010 Hb_002126_030--Hb_113853_010 Hb_016461_020 Hb_016461_020 Hb_004544_040--Hb_016461_020 Hb_004544_040--Hb_007955_050 Hb_001408_110 Hb_001408_110 Hb_004544_040--Hb_001408_110 Hb_002874_090 Hb_002874_090 Hb_004544_040--Hb_002874_090 Hb_001558_040 Hb_001558_040 Hb_004544_040--Hb_001558_040 Hb_001307_240 Hb_001307_240 Hb_004544_040--Hb_001307_240 Hb_006824_010 Hb_006824_010 Hb_007904_300--Hb_006824_010 Hb_007904_300--Hb_008948_020 Hb_000059_240 Hb_000059_240 Hb_007904_300--Hb_000059_240 Hb_000535_050 Hb_000535_050 Hb_007904_300--Hb_000535_050 Hb_000139_080 Hb_000139_080 Hb_007904_300--Hb_000139_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11057 2.76812 2.6588 2.62498 0.271662 2.99607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6535 1.64963 0.708356 2.35079 3.08659

CAGE analysis