Hb_000139_070

Information

Type -
Description -
Location Contig139: 95388-102275
Sequence    

Annotation

kegg
ID rcu:RCOM_0677750
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_012069606.1
description PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
swissprot
ID Q43191
description Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1
trembl
ID A0A067KYX0
description Lipoxygenase OS=Jatropha curcas GN=JCGZ_02156 PE=3 SV=1
Gene Ontology
ID GO:0005515
description probable linoleate 9s-lipoxygenase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10617: 96304-96487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_070 0.0 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
2 Hb_146224_010 0.1279007323 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001001_150 0.1286366812 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002174_030 0.1329587747 - - transcription elongation factor s-II, putative [Ricinus communis]
5 Hb_000014_050 0.1335602149 - - PREDICTED: V-type proton ATPase subunit B 2 [Elaeis guineensis]
6 Hb_004236_010 0.1340329642 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
7 Hb_000120_380 0.1347822912 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
8 Hb_008247_020 0.1395033912 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
9 Hb_105641_010 0.1396533301 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
10 Hb_002329_020 0.1413812981 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
11 Hb_012490_090 0.1428313669 - - PREDICTED: myosin-17 [Jatropha curcas]
12 Hb_000099_040 0.1431815745 - - unnamed protein product [Coffea canephora]
13 Hb_143766_060 0.1437322141 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
14 Hb_000025_320 0.1446611965 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
15 Hb_097185_010 0.1453756869 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
16 Hb_000015_050 0.1458672084 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
17 Hb_002929_060 0.1460509783 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000115_160 0.1460510023 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
19 Hb_000343_150 0.1461963906 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
20 Hb_000500_300 0.1462225056 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_070 Hb_000139_070 Hb_146224_010 Hb_146224_010 Hb_000139_070--Hb_146224_010 Hb_001001_150 Hb_001001_150 Hb_000139_070--Hb_001001_150 Hb_002174_030 Hb_002174_030 Hb_000139_070--Hb_002174_030 Hb_000014_050 Hb_000014_050 Hb_000139_070--Hb_000014_050 Hb_004236_010 Hb_004236_010 Hb_000139_070--Hb_004236_010 Hb_000120_380 Hb_000120_380 Hb_000139_070--Hb_000120_380 Hb_146224_010--Hb_001001_150 Hb_012490_090 Hb_012490_090 Hb_146224_010--Hb_012490_090 Hb_000313_120 Hb_000313_120 Hb_146224_010--Hb_000313_120 Hb_002260_050 Hb_002260_050 Hb_146224_010--Hb_002260_050 Hb_000115_160 Hb_000115_160 Hb_146224_010--Hb_000115_160 Hb_000215_140 Hb_000215_140 Hb_146224_010--Hb_000215_140 Hb_002641_130 Hb_002641_130 Hb_001001_150--Hb_002641_130 Hb_000035_170 Hb_000035_170 Hb_001001_150--Hb_000035_170 Hb_000573_060 Hb_000573_060 Hb_001001_150--Hb_000573_060 Hb_000473_110 Hb_000473_110 Hb_001001_150--Hb_000473_110 Hb_001318_070 Hb_001318_070 Hb_001001_150--Hb_001318_070 Hb_011689_030 Hb_011689_030 Hb_002174_030--Hb_011689_030 Hb_000025_320 Hb_000025_320 Hb_002174_030--Hb_000025_320 Hb_005357_260 Hb_005357_260 Hb_002174_030--Hb_005357_260 Hb_001191_120 Hb_001191_120 Hb_002174_030--Hb_001191_120 Hb_000099_040 Hb_000099_040 Hb_002174_030--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_002174_030--Hb_000176_100 Hb_002217_170 Hb_002217_170 Hb_000014_050--Hb_002217_170 Hb_005137_040 Hb_005137_040 Hb_000014_050--Hb_005137_040 Hb_002056_090 Hb_002056_090 Hb_000014_050--Hb_002056_090 Hb_002046_110 Hb_002046_110 Hb_000014_050--Hb_002046_110 Hb_003835_070 Hb_003835_070 Hb_000014_050--Hb_003835_070 Hb_001410_020 Hb_001410_020 Hb_000014_050--Hb_001410_020 Hb_000645_130 Hb_000645_130 Hb_004236_010--Hb_000645_130 Hb_009302_030 Hb_009302_030 Hb_004236_010--Hb_009302_030 Hb_000500_300 Hb_000500_300 Hb_004236_010--Hb_000500_300 Hb_004659_090 Hb_004659_090 Hb_004236_010--Hb_004659_090 Hb_000189_630 Hb_000189_630 Hb_004236_010--Hb_000189_630 Hb_007283_030 Hb_007283_030 Hb_004236_010--Hb_007283_030 Hb_000975_210 Hb_000975_210 Hb_000120_380--Hb_000975_210 Hb_000120_380--Hb_000500_300 Hb_002056_100 Hb_002056_100 Hb_000120_380--Hb_002056_100 Hb_000806_030 Hb_000806_030 Hb_000120_380--Hb_000806_030 Hb_000245_150 Hb_000245_150 Hb_000120_380--Hb_000245_150 Hb_000663_080 Hb_000663_080 Hb_000120_380--Hb_000663_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57605 7.90633 6.62913 2.23245 7.34205 2.78134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80009 1.87112 7.5314 5.12159 5.55559

CAGE analysis