Hb_000120_380

Information

Type transcription factor
Description TF Family: FAR1
Location Contig120: 264139-269926
Sequence    

Annotation

kegg
ID pop:POPTR_0011s14880g
description hypothetical protein
nr
ID XP_012087568.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A067JZC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24292 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06121: 264250-269107 , PASA_asmbl_06122: 269117-269625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_380 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
2 Hb_000975_210 0.0922177836 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
3 Hb_000500_300 0.0934388412 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
4 Hb_002056_100 0.0953445036 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
5 Hb_000806_030 0.1037793256 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
6 Hb_000245_150 0.1054630839 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
7 Hb_000663_080 0.1063955245 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
8 Hb_005523_020 0.1064377092 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
9 Hb_004659_090 0.1103843107 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
10 Hb_002929_060 0.1114500826 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002328_040 0.113433975 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
12 Hb_002329_020 0.1156433279 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
13 Hb_000205_260 0.1173866376 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
14 Hb_000645_130 0.1175994012 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
15 Hb_006846_170 0.118222233 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
16 Hb_003225_020 0.1190436725 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
17 Hb_000115_280 0.1192738612 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
18 Hb_001563_010 0.1193006319 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
19 Hb_053079_020 0.1205315093 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
20 Hb_000445_060 0.1215280924 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_380 Hb_000120_380 Hb_000975_210 Hb_000975_210 Hb_000120_380--Hb_000975_210 Hb_000500_300 Hb_000500_300 Hb_000120_380--Hb_000500_300 Hb_002056_100 Hb_002056_100 Hb_000120_380--Hb_002056_100 Hb_000806_030 Hb_000806_030 Hb_000120_380--Hb_000806_030 Hb_000245_150 Hb_000245_150 Hb_000120_380--Hb_000245_150 Hb_000663_080 Hb_000663_080 Hb_000120_380--Hb_000663_080 Hb_004324_360 Hb_004324_360 Hb_000975_210--Hb_004324_360 Hb_000445_060 Hb_000445_060 Hb_000975_210--Hb_000445_060 Hb_000868_120 Hb_000868_120 Hb_000975_210--Hb_000868_120 Hb_000476_060 Hb_000476_060 Hb_000975_210--Hb_000476_060 Hb_033642_120 Hb_033642_120 Hb_000975_210--Hb_033642_120 Hb_004774_090 Hb_004774_090 Hb_000975_210--Hb_004774_090 Hb_001534_210 Hb_001534_210 Hb_000500_300--Hb_001534_210 Hb_000645_130 Hb_000645_130 Hb_000500_300--Hb_000645_130 Hb_000500_300--Hb_002056_100 Hb_005523_020 Hb_005523_020 Hb_000500_300--Hb_005523_020 Hb_000500_300--Hb_000445_060 Hb_003849_140 Hb_003849_140 Hb_000500_300--Hb_003849_140 Hb_002056_100--Hb_000806_030 Hb_002056_100--Hb_000645_130 Hb_009302_030 Hb_009302_030 Hb_002056_100--Hb_009302_030 Hb_004659_090 Hb_004659_090 Hb_002056_100--Hb_004659_090 Hb_000030_140 Hb_000030_140 Hb_002056_100--Hb_000030_140 Hb_000806_030--Hb_004659_090 Hb_000806_030--Hb_000645_130 Hb_001279_040 Hb_001279_040 Hb_000806_030--Hb_001279_040 Hb_000179_190 Hb_000179_190 Hb_000806_030--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000806_030--Hb_003929_210 Hb_007035_040 Hb_007035_040 Hb_000245_150--Hb_007035_040 Hb_000205_260 Hb_000205_260 Hb_000245_150--Hb_000205_260 Hb_000245_150--Hb_005523_020 Hb_007283_010 Hb_007283_010 Hb_000245_150--Hb_007283_010 Hb_000457_230 Hb_000457_230 Hb_000245_150--Hb_000457_230 Hb_000878_160 Hb_000878_160 Hb_000245_150--Hb_000878_160 Hb_006120_040 Hb_006120_040 Hb_000663_080--Hb_006120_040 Hb_000011_240 Hb_000011_240 Hb_000663_080--Hb_000011_240 Hb_000086_270 Hb_000086_270 Hb_000663_080--Hb_000086_270 Hb_000663_080--Hb_000975_210 Hb_006846_170 Hb_006846_170 Hb_000663_080--Hb_006846_170 Hb_003228_100 Hb_003228_100 Hb_000663_080--Hb_003228_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.02446 8.33702 10.0441 3.37462 5.81514 2.98047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96368 3.46141 5.23844 4.07302 9.45908

CAGE analysis