Hb_180910_010

Information

Type -
Description -
Location Contig180910: 538-1294
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180910_010 0.0 - - -
2 Hb_186304_010 0.3170272916 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
3 Hb_001329_190 0.321351006 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_001769_110 0.323124644 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
5 Hb_007594_050 0.333165604 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001623_530 0.3342681734 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
7 Hb_004994_360 0.3391416192 - - PREDICTED: putative ripening-related protein 1 [Populus euphratica]
8 Hb_028486_060 0.3465179137 - - PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
9 Hb_102437_010 0.3470126436 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
10 Hb_010712_080 0.3473474622 - - hypothetical protein AALP_AA5G019400 [Arabis alpina]
11 Hb_002631_090 0.3489207867 - - -
12 Hb_005000_250 0.3497925052 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
13 Hb_163400_010 0.3505475057 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
14 Hb_000172_490 0.3508177271 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
15 Hb_000521_180 0.3523645915 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
16 Hb_005725_040 0.35534996 - - -
17 Hb_001758_130 0.3556719397 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
18 Hb_001369_800 0.3584315274 - - hypothetical protein B456_011G005000 [Gossypium raimondii]
19 Hb_001005_160 0.362365681 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005211_150 0.3636455458 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_180910_010 Hb_180910_010 Hb_186304_010 Hb_186304_010 Hb_180910_010--Hb_186304_010 Hb_001329_190 Hb_001329_190 Hb_180910_010--Hb_001329_190 Hb_001769_110 Hb_001769_110 Hb_180910_010--Hb_001769_110 Hb_007594_050 Hb_007594_050 Hb_180910_010--Hb_007594_050 Hb_001623_530 Hb_001623_530 Hb_180910_010--Hb_001623_530 Hb_004994_360 Hb_004994_360 Hb_180910_010--Hb_004994_360 Hb_163400_010 Hb_163400_010 Hb_186304_010--Hb_163400_010 Hb_070541_030 Hb_070541_030 Hb_186304_010--Hb_070541_030 Hb_102437_010 Hb_102437_010 Hb_186304_010--Hb_102437_010 Hb_182249_010 Hb_182249_010 Hb_186304_010--Hb_182249_010 Hb_134488_010 Hb_134488_010 Hb_186304_010--Hb_134488_010 Hb_071781_010 Hb_071781_010 Hb_186304_010--Hb_071781_010 Hb_004162_230 Hb_004162_230 Hb_001329_190--Hb_004162_230 Hb_157022_030 Hb_157022_030 Hb_001329_190--Hb_157022_030 Hb_000739_270 Hb_000739_270 Hb_001329_190--Hb_000739_270 Hb_010488_040 Hb_010488_040 Hb_001329_190--Hb_010488_040 Hb_011609_040 Hb_011609_040 Hb_001329_190--Hb_011609_040 Hb_013834_010 Hb_013834_010 Hb_001329_190--Hb_013834_010 Hb_041895_040 Hb_041895_040 Hb_001769_110--Hb_041895_040 Hb_000445_100 Hb_000445_100 Hb_001769_110--Hb_000445_100 Hb_007253_010 Hb_007253_010 Hb_001769_110--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_001769_110--Hb_000749_070 Hb_159809_050 Hb_159809_050 Hb_001769_110--Hb_159809_050 Hb_015026_040 Hb_015026_040 Hb_001769_110--Hb_015026_040 Hb_002217_370 Hb_002217_370 Hb_007594_050--Hb_002217_370 Hb_002986_040 Hb_002986_040 Hb_007594_050--Hb_002986_040 Hb_001329_010 Hb_001329_010 Hb_007594_050--Hb_001329_010 Hb_007594_050--Hb_000739_270 Hb_115823_010 Hb_115823_010 Hb_007594_050--Hb_115823_010 Hb_000429_210 Hb_000429_210 Hb_007594_050--Hb_000429_210 Hb_002217_410 Hb_002217_410 Hb_001623_530--Hb_002217_410 Hb_001623_530--Hb_004994_360 Hb_135569_010 Hb_135569_010 Hb_001623_530--Hb_135569_010 Hb_000104_070 Hb_000104_070 Hb_001623_530--Hb_000104_070 Hb_002157_250 Hb_002157_250 Hb_001623_530--Hb_002157_250 Hb_008959_040 Hb_008959_040 Hb_004994_360--Hb_008959_040 Hb_032202_130 Hb_032202_130 Hb_004994_360--Hb_032202_130 Hb_004994_360--Hb_001329_190 Hb_005016_180 Hb_005016_180 Hb_004994_360--Hb_005016_180 Hb_005211_150 Hb_005211_150 Hb_004994_360--Hb_005211_150 Hb_004994_360--Hb_000104_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.263264 0.515996 0.381351 0.135292 0.134254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.339752 0 0 0 0

CAGE analysis