Hb_007594_050

Information

Type -
Description -
Location Contig7594: 27938-32058
Sequence    

Annotation

kegg
ID rcu:RCOM_1612610
description ATP binding protein, putative
nr
ID XP_002511751.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID O64639
description Receptor-like serine/threonine-protein kinase At2g45590 OS=Arabidopsis thaliana GN=At2g45590 PE=2 SV=1
trembl
ID B9RDG2
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1612610 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like serine threonine-protein kinase at2g45590

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57190: 28913-29147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007594_050 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002217_370 0.2456865428 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105643685 [Jatropha curcas]
3 Hb_002986_040 0.2590981626 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
4 Hb_001329_010 0.2642066563 - - zinc finger protein, putative [Ricinus communis]
5 Hb_000739_270 0.266832886 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
6 Hb_115823_010 0.2683013897 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000429_210 0.2719541737 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
8 Hb_003894_090 0.2725458803 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000069_390 0.2818993604 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
10 Hb_000522_070 0.2843787155 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
11 Hb_007416_380 0.2865719504 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
12 Hb_028621_030 0.2898504629 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
13 Hb_000656_320 0.2913582677 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
14 Hb_007904_050 0.2952892622 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
15 Hb_000009_370 0.2964378072 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
16 Hb_157022_030 0.2966311467 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
17 Hb_000756_030 0.2969411443 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_001318_160 0.297860749 - - Polygalacturonase precursor, putative [Ricinus communis]
19 Hb_141199_010 0.2980690791 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_004586_050 0.2999343732 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]

Gene co-expression network

sample Hb_007594_050 Hb_007594_050 Hb_002217_370 Hb_002217_370 Hb_007594_050--Hb_002217_370 Hb_002986_040 Hb_002986_040 Hb_007594_050--Hb_002986_040 Hb_001329_010 Hb_001329_010 Hb_007594_050--Hb_001329_010 Hb_000739_270 Hb_000739_270 Hb_007594_050--Hb_000739_270 Hb_115823_010 Hb_115823_010 Hb_007594_050--Hb_115823_010 Hb_000429_210 Hb_000429_210 Hb_007594_050--Hb_000429_210 Hb_004586_050 Hb_004586_050 Hb_002217_370--Hb_004586_050 Hb_000331_020 Hb_000331_020 Hb_002217_370--Hb_000331_020 Hb_006197_010 Hb_006197_010 Hb_002217_370--Hb_006197_010 Hb_022465_010 Hb_022465_010 Hb_002217_370--Hb_022465_010 Hb_001398_110 Hb_001398_110 Hb_002217_370--Hb_001398_110 Hb_000656_320 Hb_000656_320 Hb_002217_370--Hb_000656_320 Hb_008453_040 Hb_008453_040 Hb_002986_040--Hb_008453_040 Hb_180924_010 Hb_180924_010 Hb_002986_040--Hb_180924_010 Hb_000556_130 Hb_000556_130 Hb_002986_040--Hb_000556_130 Hb_001410_030 Hb_001410_030 Hb_002986_040--Hb_001410_030 Hb_002986_040--Hb_001329_010 Hb_001329_010--Hb_000656_320 Hb_013344_010 Hb_013344_010 Hb_001329_010--Hb_013344_010 Hb_001329_010--Hb_000556_130 Hb_003813_110 Hb_003813_110 Hb_001329_010--Hb_003813_110 Hb_002942_170 Hb_002942_170 Hb_001329_010--Hb_002942_170 Hb_072201_010 Hb_072201_010 Hb_001329_010--Hb_072201_010 Hb_036790_030 Hb_036790_030 Hb_000739_270--Hb_036790_030 Hb_004162_230 Hb_004162_230 Hb_000739_270--Hb_004162_230 Hb_008994_010 Hb_008994_010 Hb_000739_270--Hb_008994_010 Hb_000345_130 Hb_000345_130 Hb_000739_270--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_000739_270--Hb_008406_100 Hb_010998_050 Hb_010998_050 Hb_000739_270--Hb_010998_050 Hb_007904_050 Hb_007904_050 Hb_115823_010--Hb_007904_050 Hb_003894_090 Hb_003894_090 Hb_115823_010--Hb_003894_090 Hb_005181_020 Hb_005181_020 Hb_115823_010--Hb_005181_020 Hb_115823_010--Hb_002942_170 Hb_022425_020 Hb_022425_020 Hb_115823_010--Hb_022425_020 Hb_141199_010 Hb_141199_010 Hb_115823_010--Hb_141199_010 Hb_007416_380 Hb_007416_380 Hb_000429_210--Hb_007416_380 Hb_171646_010 Hb_171646_010 Hb_000429_210--Hb_171646_010 Hb_000069_390 Hb_000069_390 Hb_000429_210--Hb_000069_390 Hb_000574_520 Hb_000574_520 Hb_000429_210--Hb_000574_520 Hb_003750_100 Hb_003750_100 Hb_000429_210--Hb_003750_100 Hb_010916_010 Hb_010916_010 Hb_000429_210--Hb_010916_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00844974 0.140023 0.0552279 0 0.0197513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0232652 0 0 0 0

CAGE analysis