Hb_003750_100

Information

Type -
Description -
Location Contig3750: 78169-79686
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08590g
description POPTRDRAFT_817912; HMGI/Y family protein
nr
ID XP_002305213.1
description HMGI/Y family protein [Populus trichocarpa]
swissprot
ID Q00423
description HMG-Y-related protein A OS=Glycine max PE=2 SV=1
trembl
ID B9H3A3
description HMGI/Y family protein OS=Populus trichocarpa GN=POPTR_0004s08590g PE=3 SV=1
Gene Ontology
ID GO:0000786
description hmg-y-related protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38291: 78573-79772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003750_100 0.0 - - HMGI/Y family protein [Populus trichocarpa]
2 Hb_002049_040 0.0777275058 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
3 Hb_006953_010 0.0777375924 - - cytochrome P450, putative [Ricinus communis]
4 Hb_182291_010 0.0777439387 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
5 Hb_004598_010 0.0777806391 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
6 Hb_001372_010 0.0777937177 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_107495_020 0.0778387655 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
8 Hb_001536_070 0.0778823725 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
9 Hb_000265_040 0.0778897674 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
10 Hb_001171_020 0.0779796222 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
11 Hb_075653_010 0.0782519397 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
12 Hb_002305_040 0.0783704776 - - TMV resistance protein N, putative [Ricinus communis]
13 Hb_000514_010 0.078599481 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
14 Hb_004228_050 0.0792799069 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
15 Hb_000592_150 0.0794686813 - - Os05g0413200 [Oryza sativa Japonica Group]
16 Hb_004722_050 0.0809030536 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
17 Hb_002585_050 0.0818182119 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001926_050 0.0841901747 - - PREDICTED: peroxidase 19 [Jatropha curcas]
19 Hb_000227_010 0.0844454413 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
20 Hb_007816_010 0.0845428026 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]

Gene co-expression network

sample Hb_003750_100 Hb_003750_100 Hb_002049_040 Hb_002049_040 Hb_003750_100--Hb_002049_040 Hb_006953_010 Hb_006953_010 Hb_003750_100--Hb_006953_010 Hb_182291_010 Hb_182291_010 Hb_003750_100--Hb_182291_010 Hb_004598_010 Hb_004598_010 Hb_003750_100--Hb_004598_010 Hb_001372_010 Hb_001372_010 Hb_003750_100--Hb_001372_010 Hb_107495_020 Hb_107495_020 Hb_003750_100--Hb_107495_020 Hb_002049_040--Hb_182291_010 Hb_002049_040--Hb_006953_010 Hb_002049_040--Hb_004598_010 Hb_002049_040--Hb_001372_010 Hb_002049_040--Hb_107495_020 Hb_001536_070 Hb_001536_070 Hb_002049_040--Hb_001536_070 Hb_006953_010--Hb_107495_020 Hb_006953_010--Hb_182291_010 Hb_006953_010--Hb_001536_070 Hb_000265_040 Hb_000265_040 Hb_006953_010--Hb_000265_040 Hb_006953_010--Hb_004598_010 Hb_182291_010--Hb_004598_010 Hb_182291_010--Hb_001372_010 Hb_001171_020 Hb_001171_020 Hb_182291_010--Hb_001171_020 Hb_182291_010--Hb_107495_020 Hb_004598_010--Hb_001372_010 Hb_004598_010--Hb_001171_020 Hb_004598_010--Hb_107495_020 Hb_001372_010--Hb_001171_020 Hb_001372_010--Hb_006953_010 Hb_001372_010--Hb_107495_020 Hb_107495_020--Hb_001536_070 Hb_107495_020--Hb_000265_040 Hb_075653_010 Hb_075653_010 Hb_107495_020--Hb_075653_010 Hb_002305_040 Hb_002305_040 Hb_107495_020--Hb_002305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.85156 1.18014 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0 0 0 0

CAGE analysis