Hb_000429_210

Information

Type transcription factor
Description TF Family: ERF
Location Contig429: 291092-291967
Sequence    

Annotation

kegg
ID rcu:RCOM_0089590
description hypothetical protein
nr
ID XP_002526723.1
description hypothetical protein RCOM_0089590 [Ricinus communis]
swissprot
ID Q9SVX5
description Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1
trembl
ID B9SL54
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0089590 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dehydration-responsive element-binding protein 2f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42125: 291358-291721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_210 0.0 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
2 Hb_007416_380 0.2084553994 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
3 Hb_171646_010 0.2093542883 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
4 Hb_000069_390 0.2106886988 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
5 Hb_000574_520 0.214862364 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
6 Hb_003750_100 0.2181781703 - - HMGI/Y family protein [Populus trichocarpa]
7 Hb_010916_010 0.2188045796 - - terpene synthase [Populus trichocarpa]
8 Hb_007218_010 0.2257665249 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
9 Hb_000077_430 0.226295363 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
10 Hb_008453_120 0.2302065264 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
11 Hb_183612_020 0.2359507777 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
12 Hb_028621_030 0.2383519872 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
13 Hb_000975_140 0.2401635204 - - lactoylglutathione lyase family protein [Populus trichocarpa]
14 Hb_029879_040 0.240862105 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
15 Hb_012573_060 0.2414792407 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
16 Hb_000680_080 0.2416390672 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
17 Hb_022929_010 0.2416633309 - - zinc/iron transporter, putative [Ricinus communis]
18 Hb_002030_140 0.2417402286 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
19 Hb_014109_030 0.2421358129 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
20 Hb_001546_100 0.2421509682 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]

Gene co-expression network

sample Hb_000429_210 Hb_000429_210 Hb_007416_380 Hb_007416_380 Hb_000429_210--Hb_007416_380 Hb_171646_010 Hb_171646_010 Hb_000429_210--Hb_171646_010 Hb_000069_390 Hb_000069_390 Hb_000429_210--Hb_000069_390 Hb_000574_520 Hb_000574_520 Hb_000429_210--Hb_000574_520 Hb_003750_100 Hb_003750_100 Hb_000429_210--Hb_003750_100 Hb_010916_010 Hb_010916_010 Hb_000429_210--Hb_010916_010 Hb_007416_380--Hb_000069_390 Hb_007416_380--Hb_000574_520 Hb_141199_010 Hb_141199_010 Hb_007416_380--Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_007416_380--Hb_005181_020 Hb_183612_020 Hb_183612_020 Hb_007416_380--Hb_183612_020 Hb_002450_150 Hb_002450_150 Hb_007416_380--Hb_002450_150 Hb_000077_430 Hb_000077_430 Hb_171646_010--Hb_000077_430 Hb_021622_010 Hb_021622_010 Hb_171646_010--Hb_021622_010 Hb_014109_030 Hb_014109_030 Hb_171646_010--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_171646_010--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_171646_010--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_171646_010--Hb_004447_040 Hb_000069_390--Hb_000574_520 Hb_000069_390--Hb_141199_010 Hb_000069_390--Hb_005181_020 Hb_004449_160 Hb_004449_160 Hb_000069_390--Hb_004449_160 Hb_000069_390--Hb_002450_150 Hb_000574_520--Hb_183612_020 Hb_000574_520--Hb_002450_150 Hb_000574_520--Hb_141199_010 Hb_000574_520--Hb_005181_020 Hb_002049_040 Hb_002049_040 Hb_003750_100--Hb_002049_040 Hb_006953_010 Hb_006953_010 Hb_003750_100--Hb_006953_010 Hb_182291_010 Hb_182291_010 Hb_003750_100--Hb_182291_010 Hb_004598_010 Hb_004598_010 Hb_003750_100--Hb_004598_010 Hb_001372_010 Hb_001372_010 Hb_003750_100--Hb_001372_010 Hb_107495_020 Hb_107495_020 Hb_003750_100--Hb_107495_020 Hb_003147_020 Hb_003147_020 Hb_010916_010--Hb_003147_020 Hb_149407_010 Hb_149407_010 Hb_010916_010--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_010916_010--Hb_162008_030 Hb_007218_010 Hb_007218_010 Hb_010916_010--Hb_007218_010 Hb_029879_040 Hb_029879_040 Hb_010916_010--Hb_029879_040 Hb_000129_060 Hb_000129_060 Hb_010916_010--Hb_000129_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.89027 0.0681837 0 0.0606122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0599318 0 0 0 0

CAGE analysis