Hb_001623_530

Information

Type transcription factor
Description TF Family: MYB
Location Contig1623: 404109-405274
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17350g
description POPTRDRAFT_565013; myb family transcription factor family protein
nr
ID XP_002311700.1
description myb family transcription factor family protein [Populus trichocarpa]
swissprot
ID Q4JL84
description Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2
trembl
ID B9HKW3
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0008s17350g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_530 0.0 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
2 Hb_002217_410 0.3298620915 - - hypothetical protein L484_027883 [Morus notabilis]
3 Hb_004994_360 0.3313177484 - - PREDICTED: putative ripening-related protein 1 [Populus euphratica]
4 Hb_180910_010 0.3342681734 - - -
5 Hb_135569_010 0.3458149216 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
6 Hb_000104_070 0.3571059464 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
7 Hb_002157_250 0.3571198477 - - Pectinesterase-4 precursor, putative [Ricinus communis]
8 Hb_005016_180 0.3625842923 - - phosphoglycerate kinase, putative [Ricinus communis]
9 Hb_001758_130 0.3807722155 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
10 Hb_003939_020 0.3825634234 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
11 Hb_131864_030 0.3830950721 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
12 Hb_005725_040 0.3837054096 - - -
13 Hb_000656_180 0.3839465776 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
14 Hb_000331_070 0.3870842129 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
15 Hb_170516_010 0.3902804684 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
16 Hb_002345_080 0.3933126234 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_160233_020 0.3948530753 - - -
18 Hb_028486_060 0.3963846013 - - PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
19 Hb_002450_140 0.3982084154 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
20 Hb_092062_010 0.3993260892 - - hypothetical protein JCGZ_25129 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_530 Hb_001623_530 Hb_002217_410 Hb_002217_410 Hb_001623_530--Hb_002217_410 Hb_004994_360 Hb_004994_360 Hb_001623_530--Hb_004994_360 Hb_180910_010 Hb_180910_010 Hb_001623_530--Hb_180910_010 Hb_135569_010 Hb_135569_010 Hb_001623_530--Hb_135569_010 Hb_000104_070 Hb_000104_070 Hb_001623_530--Hb_000104_070 Hb_002157_250 Hb_002157_250 Hb_001623_530--Hb_002157_250 Hb_002217_410--Hb_000104_070 Hb_005016_180 Hb_005016_180 Hb_002217_410--Hb_005016_180 Hb_001862_080 Hb_001862_080 Hb_002217_410--Hb_001862_080 Hb_002217_410--Hb_135569_010 Hb_045985_010 Hb_045985_010 Hb_002217_410--Hb_045985_010 Hb_000230_310 Hb_000230_310 Hb_002217_410--Hb_000230_310 Hb_008959_040 Hb_008959_040 Hb_004994_360--Hb_008959_040 Hb_032202_130 Hb_032202_130 Hb_004994_360--Hb_032202_130 Hb_001329_190 Hb_001329_190 Hb_004994_360--Hb_001329_190 Hb_004994_360--Hb_005016_180 Hb_005211_150 Hb_005211_150 Hb_004994_360--Hb_005211_150 Hb_004994_360--Hb_000104_070 Hb_186304_010 Hb_186304_010 Hb_180910_010--Hb_186304_010 Hb_180910_010--Hb_001329_190 Hb_001769_110 Hb_001769_110 Hb_180910_010--Hb_001769_110 Hb_007594_050 Hb_007594_050 Hb_180910_010--Hb_007594_050 Hb_180910_010--Hb_004994_360 Hb_078160_010 Hb_078160_010 Hb_135569_010--Hb_078160_010 Hb_170516_010 Hb_170516_010 Hb_135569_010--Hb_170516_010 Hb_005548_030 Hb_005548_030 Hb_135569_010--Hb_005548_030 Hb_032990_020 Hb_032990_020 Hb_135569_010--Hb_032990_020 Hb_115116_010 Hb_115116_010 Hb_135569_010--Hb_115116_010 Hb_000104_070--Hb_005016_180 Hb_000104_070--Hb_001862_080 Hb_000104_070--Hb_045985_010 Hb_000104_070--Hb_000230_310 Hb_027402_040 Hb_027402_040 Hb_002157_250--Hb_027402_040 Hb_002374_330 Hb_002374_330 Hb_002157_250--Hb_002374_330 Hb_001196_080 Hb_001196_080 Hb_002157_250--Hb_001196_080 Hb_000692_120 Hb_000692_120 Hb_002157_250--Hb_000692_120 Hb_001950_020 Hb_001950_020 Hb_002157_250--Hb_001950_020 Hb_002445_130 Hb_002445_130 Hb_002157_250--Hb_002445_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0844757 0.0889801 0.0510497 0.130932 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0641861 0 0 0 0

CAGE analysis