Hb_117038_010

Information

Type -
Description -
Location Contig117038: 799-1164
Sequence    

Annotation

kegg
ID rcu:RCOM_1589470
description cysteine protease, putative (EC:1.3.1.74)
nr
ID ABG33750.1
description cysteine protease [Hevea brasiliensis]
swissprot
ID P43297
description Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1
trembl
ID Q155L4
description Cysteine protease OS=Hevea brasiliensis GN=CP1 PE=2 SV=1
Gene Ontology
ID GO:0008234
description cysteine proteinase rd21a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117038_010 0.0 - - cysteine protease [Hevea brasiliensis]
2 Hb_001195_470 0.1339249431 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
3 Hb_001486_070 0.1435301027 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
4 Hb_008749_030 0.143886184 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
5 Hb_111973_010 0.1446329084 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_001205_110 0.1460529241 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
7 Hb_002662_050 0.1498420827 - - cysteine protease CP1 [Manihot esculenta]
8 Hb_000099_030 0.150605949 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
9 Hb_006637_020 0.1507177576 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
10 Hb_000723_220 0.1532606324 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
11 Hb_000680_110 0.1558530447 - - Endosomal P24A protein precursor, putative [Ricinus communis]
12 Hb_012239_030 0.15653874 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000345_360 0.1594514469 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
14 Hb_002902_080 0.160230049 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
15 Hb_004875_030 0.1609785617 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
16 Hb_006663_030 0.161358009 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_001437_190 0.161780561 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_002284_250 0.1631775508 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
19 Hb_002391_290 0.1651846831 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
20 Hb_002192_030 0.1670153379 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_117038_010 Hb_117038_010 Hb_001195_470 Hb_001195_470 Hb_117038_010--Hb_001195_470 Hb_001486_070 Hb_001486_070 Hb_117038_010--Hb_001486_070 Hb_008749_030 Hb_008749_030 Hb_117038_010--Hb_008749_030 Hb_111973_010 Hb_111973_010 Hb_117038_010--Hb_111973_010 Hb_001205_110 Hb_001205_110 Hb_117038_010--Hb_001205_110 Hb_002662_050 Hb_002662_050 Hb_117038_010--Hb_002662_050 Hb_000723_220 Hb_000723_220 Hb_001195_470--Hb_000723_220 Hb_004019_120 Hb_004019_120 Hb_001195_470--Hb_004019_120 Hb_000680_110 Hb_000680_110 Hb_001195_470--Hb_000680_110 Hb_003417_010 Hb_003417_010 Hb_001195_470--Hb_003417_010 Hb_001821_150 Hb_001821_150 Hb_001195_470--Hb_001821_150 Hb_004531_120 Hb_004531_120 Hb_001195_470--Hb_004531_120 Hb_000345_360 Hb_000345_360 Hb_001486_070--Hb_000345_360 Hb_004875_030 Hb_004875_030 Hb_001486_070--Hb_004875_030 Hb_001366_210 Hb_001366_210 Hb_001486_070--Hb_001366_210 Hb_000990_090 Hb_000990_090 Hb_001486_070--Hb_000990_090 Hb_000139_130 Hb_000139_130 Hb_001486_070--Hb_000139_130 Hb_078477_050 Hb_078477_050 Hb_001486_070--Hb_078477_050 Hb_008749_030--Hb_001205_110 Hb_012239_030 Hb_012239_030 Hb_008749_030--Hb_012239_030 Hb_000552_100 Hb_000552_100 Hb_008749_030--Hb_000552_100 Hb_001989_050 Hb_001989_050 Hb_008749_030--Hb_001989_050 Hb_000261_100 Hb_000261_100 Hb_008749_030--Hb_000261_100 Hb_002400_140 Hb_002400_140 Hb_008749_030--Hb_002400_140 Hb_000757_100 Hb_000757_100 Hb_111973_010--Hb_000757_100 Hb_003430_060 Hb_003430_060 Hb_111973_010--Hb_003430_060 Hb_002454_020 Hb_002454_020 Hb_111973_010--Hb_002454_020 Hb_013358_080 Hb_013358_080 Hb_111973_010--Hb_013358_080 Hb_000453_100 Hb_000453_100 Hb_111973_010--Hb_000453_100 Hb_001205_110--Hb_012239_030 Hb_010697_040 Hb_010697_040 Hb_001205_110--Hb_010697_040 Hb_001205_110--Hb_000139_130 Hb_000608_260 Hb_000608_260 Hb_001205_110--Hb_000608_260 Hb_002213_040 Hb_002213_040 Hb_001205_110--Hb_002213_040 Hb_002662_050--Hb_012239_030 Hb_000674_010 Hb_000674_010 Hb_002662_050--Hb_000674_010 Hb_002662_050--Hb_001205_110 Hb_008221_170 Hb_008221_170 Hb_002662_050--Hb_008221_170 Hb_023765_010 Hb_023765_010 Hb_002662_050--Hb_023765_010 Hb_000099_030 Hb_000099_030 Hb_002662_050--Hb_000099_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.9077 47.1752 3.79578 91.1655 46.45 47.8093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8255 6.91483 22.9285 59.188 39.734

CAGE analysis