Hb_033555_020

Information

Type -
Description -
Location Contig33555: 21573-23628
Sequence    

Annotation

kegg
ID tcc:TCM_003129
description hypothetical protein
nr
ID XP_007049889.1
description Uncharacterized protein TCM_003129 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DPN0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003129 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033555_020 0.0 - - Uncharacterized protein TCM_003129 [Theobroma cacao]
2 Hb_001673_100 0.3236720647 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
3 Hb_011947_020 0.3248114793 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_000922_010 0.325001322 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
5 Hb_000824_050 0.3327149784 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
6 Hb_121461_020 0.3368862285 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_020763_010 0.3424490253 - - polyamine oxidase, putative [Ricinus communis]
8 Hb_000189_220 0.3426601468 - - -
9 Hb_000216_030 0.3435727335 - - aldehyde oxidase, putative [Ricinus communis]
10 Hb_065525_110 0.346214248 - - PREDICTED: meiotic recombination protein SPO11-2 [Jatropha curcas]
11 Hb_000189_590 0.356076018 - - PREDICTED: cysteine synthase [Jatropha curcas]
12 Hb_030982_060 0.3575249317 - - conserved hypothetical protein [Ricinus communis]
13 Hb_023827_020 0.3588190151 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
14 Hb_130885_010 0.359799512 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
15 Hb_018609_030 0.3601432351 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022276_020 0.3624928683 - - -
17 Hb_012633_030 0.3649321919 - - hypothetical protein RCOM_0452240 [Ricinus communis]
18 Hb_003470_060 0.3660159822 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 45 [Jatropha curcas]
19 Hb_001123_010 0.3676152988 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004870_040 0.3686530436 - - -

Gene co-expression network

sample Hb_033555_020 Hb_033555_020 Hb_001673_100 Hb_001673_100 Hb_033555_020--Hb_001673_100 Hb_011947_020 Hb_011947_020 Hb_033555_020--Hb_011947_020 Hb_000922_010 Hb_000922_010 Hb_033555_020--Hb_000922_010 Hb_000824_050 Hb_000824_050 Hb_033555_020--Hb_000824_050 Hb_121461_020 Hb_121461_020 Hb_033555_020--Hb_121461_020 Hb_020763_010 Hb_020763_010 Hb_033555_020--Hb_020763_010 Hb_002908_060 Hb_002908_060 Hb_001673_100--Hb_002908_060 Hb_002631_130 Hb_002631_130 Hb_001673_100--Hb_002631_130 Hb_000548_070 Hb_000548_070 Hb_001673_100--Hb_000548_070 Hb_003098_080 Hb_003098_080 Hb_001673_100--Hb_003098_080 Hb_000950_010 Hb_000950_010 Hb_001673_100--Hb_000950_010 Hb_004870_040 Hb_004870_040 Hb_001673_100--Hb_004870_040 Hb_000189_590 Hb_000189_590 Hb_011947_020--Hb_000189_590 Hb_030982_060 Hb_030982_060 Hb_011947_020--Hb_030982_060 Hb_011947_020--Hb_000824_050 Hb_023827_020 Hb_023827_020 Hb_011947_020--Hb_023827_020 Hb_032225_030 Hb_032225_030 Hb_011947_020--Hb_032225_030 Hb_004330_080 Hb_004330_080 Hb_011947_020--Hb_004330_080 Hb_005152_010 Hb_005152_010 Hb_000922_010--Hb_005152_010 Hb_001004_100 Hb_001004_100 Hb_000922_010--Hb_001004_100 Hb_158092_060 Hb_158092_060 Hb_000922_010--Hb_158092_060 Hb_000471_080 Hb_000471_080 Hb_000922_010--Hb_000471_080 Hb_001123_010 Hb_001123_010 Hb_000922_010--Hb_001123_010 Hb_000922_010--Hb_030982_060 Hb_135757_020 Hb_135757_020 Hb_000824_050--Hb_135757_020 Hb_006922_090 Hb_006922_090 Hb_000824_050--Hb_006922_090 Hb_000824_050--Hb_023827_020 Hb_000679_190 Hb_000679_190 Hb_000824_050--Hb_000679_190 Hb_004094_020 Hb_004094_020 Hb_000824_050--Hb_004094_020 Hb_001946_310 Hb_001946_310 Hb_000824_050--Hb_001946_310 Hb_022276_020 Hb_022276_020 Hb_121461_020--Hb_022276_020 Hb_162557_010 Hb_162557_010 Hb_121461_020--Hb_162557_010 Hb_121461_020--Hb_000922_010 Hb_009732_040 Hb_009732_040 Hb_121461_020--Hb_009732_040 Hb_002849_150 Hb_002849_150 Hb_121461_020--Hb_002849_150 Hb_003392_030 Hb_003392_030 Hb_121461_020--Hb_003392_030 Hb_003197_060 Hb_003197_060 Hb_020763_010--Hb_003197_060 Hb_143769_010 Hb_143769_010 Hb_020763_010--Hb_143769_010 Hb_018609_030 Hb_018609_030 Hb_020763_010--Hb_018609_030 Hb_005511_090 Hb_005511_090 Hb_020763_010--Hb_005511_090 Hb_099990_010 Hb_099990_010 Hb_020763_010--Hb_099990_010 Hb_000216_030 Hb_000216_030 Hb_020763_010--Hb_000216_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.203262 0.0608899 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0748067 0 0.105595 0.310351 0.117105

CAGE analysis