Hb_006920_050

Information

Type -
Description -
Location Contig6920: 33959-34222
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAA80630.1
description endo-1,4-beta-glucanase [Vigna radiata var. radiata]
swissprot
ID -
description -
trembl
ID O50014
description Endo-1,4-beta-glucanase (Fragment) OS=Vigna radiata var. radiata PE=4 SV=1
Gene Ontology
ID GO:0008810
description partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006920_050 0.0 - - endo-1,4-beta-glucanase [Vigna radiata var. radiata]
2 Hb_016777_030 0.312643762 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
3 Hb_000248_120 0.3187230066 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
4 Hb_004947_070 0.3334469446 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
5 Hb_086993_010 0.3396648607 - - -
6 Hb_012103_010 0.3397518587 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
7 Hb_126395_010 0.3539416218 - - hypothetical protein VITISV_043980 [Vitis vinifera]
8 Hb_157029_010 0.3595511695 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
9 Hb_000705_330 0.36647006 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
10 Hb_001032_040 0.3698647529 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
11 Hb_051731_010 0.3771615072 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_004021_110 0.3806291834 - - -
13 Hb_020469_010 0.3818717087 - - -
14 Hb_133191_010 0.3840301293 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
15 Hb_002053_040 0.385738191 - - PREDICTED: AT-hook motif nuclear-localized protein 24 [Jatropha curcas]
16 Hb_000705_310 0.3858376353 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
17 Hb_001631_120 0.3859913071 - - unnamed protein product [Vitis vinifera]
18 Hb_000105_090 0.3861842714 - - -
19 Hb_002805_080 0.3864611284 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
20 Hb_001486_110 0.3865800624 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]

Gene co-expression network

sample Hb_006920_050 Hb_006920_050 Hb_016777_030 Hb_016777_030 Hb_006920_050--Hb_016777_030 Hb_000248_120 Hb_000248_120 Hb_006920_050--Hb_000248_120 Hb_004947_070 Hb_004947_070 Hb_006920_050--Hb_004947_070 Hb_086993_010 Hb_086993_010 Hb_006920_050--Hb_086993_010 Hb_012103_010 Hb_012103_010 Hb_006920_050--Hb_012103_010 Hb_126395_010 Hb_126395_010 Hb_006920_050--Hb_126395_010 Hb_000705_330 Hb_000705_330 Hb_016777_030--Hb_000705_330 Hb_002053_040 Hb_002053_040 Hb_016777_030--Hb_002053_040 Hb_043999_010 Hb_043999_010 Hb_016777_030--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_016777_030--Hb_007765_090 Hb_001105_060 Hb_001105_060 Hb_016777_030--Hb_001105_060 Hb_000809_150 Hb_000809_150 Hb_016777_030--Hb_000809_150 Hb_000407_060 Hb_000407_060 Hb_000248_120--Hb_000407_060 Hb_000248_120--Hb_012103_010 Hb_000175_550 Hb_000175_550 Hb_000248_120--Hb_000175_550 Hb_111834_020 Hb_111834_020 Hb_000248_120--Hb_111834_020 Hb_003238_010 Hb_003238_010 Hb_000248_120--Hb_003238_010 Hb_000701_070 Hb_000701_070 Hb_000248_120--Hb_000701_070 Hb_144552_010 Hb_144552_010 Hb_004947_070--Hb_144552_010 Hb_000906_050 Hb_000906_050 Hb_004947_070--Hb_000906_050 Hb_010172_060 Hb_010172_060 Hb_004947_070--Hb_010172_060 Hb_006995_020 Hb_006995_020 Hb_004947_070--Hb_006995_020 Hb_001969_050 Hb_001969_050 Hb_004947_070--Hb_001969_050 Hb_173423_010 Hb_173423_010 Hb_004947_070--Hb_173423_010 Hb_014988_030 Hb_014988_030 Hb_086993_010--Hb_014988_030 Hb_133191_010 Hb_133191_010 Hb_086993_010--Hb_133191_010 Hb_051731_010 Hb_051731_010 Hb_086993_010--Hb_051731_010 Hb_000915_190 Hb_000915_190 Hb_086993_010--Hb_000915_190 Hb_001706_030 Hb_001706_030 Hb_086993_010--Hb_001706_030 Hb_012253_020 Hb_012253_020 Hb_086993_010--Hb_012253_020 Hb_000191_160 Hb_000191_160 Hb_012103_010--Hb_000191_160 Hb_007223_020 Hb_007223_020 Hb_012103_010--Hb_007223_020 Hb_012103_010--Hb_003238_010 Hb_004885_020 Hb_004885_020 Hb_012103_010--Hb_004885_020 Hb_003780_040 Hb_003780_040 Hb_012103_010--Hb_003780_040 Hb_002248_040 Hb_002248_040 Hb_126395_010--Hb_002248_040 Hb_115031_030 Hb_115031_030 Hb_126395_010--Hb_115031_030 Hb_003388_070 Hb_003388_070 Hb_126395_010--Hb_003388_070 Hb_005656_130 Hb_005656_130 Hb_126395_010--Hb_005656_130 Hb_007595_060 Hb_007595_060 Hb_126395_010--Hb_007595_060 Hb_126395_010--Hb_001706_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.229858 2.79026 0 0 4.55496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.17721 1.19123

CAGE analysis