Hb_003633_090

Information

Type -
Description -
Location Contig3633: 78798-85031
Sequence    

Annotation

kegg
ID rcu:RCOM_1433550
description arginine/serine-rich splicing factor, putative
nr
ID XP_002512441.1
description arginine/serine-rich splicing factor, putative [Ricinus communis]
swissprot
ID Q9XFR5
description Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 SV=1
trembl
ID B9RFC2
description Arginine/serine-rich splicing factor, putative OS=Ricinus communis GN=RCOM_1433550 PE=4 SV=1
Gene Ontology
ID GO:0016607
description pre-mrna-splicing factor sf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37364: 78741-85192 , PASA_asmbl_37365: 78741-85192 , PASA_asmbl_37366: 84914-85129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_090 0.0 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
2 Hb_000260_760 0.0884063229 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
3 Hb_000172_360 0.0930595929 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
4 Hb_000172_340 0.0951461741 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
5 Hb_000661_120 0.096050691 - - cap binding protein, putative [Ricinus communis]
6 Hb_000954_010 0.0962079772 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
7 Hb_000856_300 0.098444777 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
8 Hb_002461_020 0.0994031736 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
9 Hb_000020_160 0.0994486192 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
10 Hb_001008_100 0.0995985921 - - JHL25H03.10 [Jatropha curcas]
11 Hb_005305_100 0.1008503245 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_000336_020 0.1012304428 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
13 Hb_016461_020 0.101855223 - - conserved hypothetical protein [Ricinus communis]
14 Hb_103688_010 0.1030046029 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
15 Hb_003913_020 0.1031911298 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]
16 Hb_003058_140 0.1035866547 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000046_600 0.1052378093 - - PREDICTED: cullin-1-like [Jatropha curcas]
18 Hb_001159_060 0.1054028661 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
19 Hb_002045_170 0.1058279387 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
20 Hb_004718_060 0.1064823291 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003633_090 Hb_003633_090 Hb_000260_760 Hb_000260_760 Hb_003633_090--Hb_000260_760 Hb_000172_360 Hb_000172_360 Hb_003633_090--Hb_000172_360 Hb_000172_340 Hb_000172_340 Hb_003633_090--Hb_000172_340 Hb_000661_120 Hb_000661_120 Hb_003633_090--Hb_000661_120 Hb_000954_010 Hb_000954_010 Hb_003633_090--Hb_000954_010 Hb_000856_300 Hb_000856_300 Hb_003633_090--Hb_000856_300 Hb_000030_140 Hb_000030_140 Hb_000260_760--Hb_000030_140 Hb_002461_020 Hb_002461_020 Hb_000260_760--Hb_002461_020 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000996_020 Hb_000996_020 Hb_000260_760--Hb_000996_020 Hb_009178_010 Hb_009178_010 Hb_000260_760--Hb_009178_010 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010 Hb_003058_140 Hb_003058_140 Hb_000172_360--Hb_003058_140 Hb_005305_100 Hb_005305_100 Hb_000172_360--Hb_005305_100 Hb_000172_360--Hb_000260_760 Hb_008165_020 Hb_008165_020 Hb_000172_360--Hb_008165_020 Hb_009158_060 Hb_009158_060 Hb_000172_360--Hb_009158_060 Hb_001159_060 Hb_001159_060 Hb_000172_360--Hb_001159_060 Hb_001904_030 Hb_001904_030 Hb_000172_340--Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_123531_010 Hb_123531_010 Hb_000172_340--Hb_123531_010 Hb_007245_020 Hb_007245_020 Hb_000172_340--Hb_007245_020 Hb_000066_150 Hb_000066_150 Hb_000172_340--Hb_000066_150 Hb_000661_120--Hb_000996_020 Hb_000445_060 Hb_000445_060 Hb_000661_120--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000661_120--Hb_000373_170 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000661_120--Hb_000529_060 Hb_000868_120 Hb_000868_120 Hb_000661_120--Hb_000868_120 Hb_000103_290 Hb_000103_290 Hb_000954_010--Hb_000103_290 Hb_000702_090 Hb_000702_090 Hb_000954_010--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_000954_010--Hb_016172_030 Hb_000336_020 Hb_000336_020 Hb_000954_010--Hb_000336_020 Hb_002045_170 Hb_002045_170 Hb_000954_010--Hb_002045_170 Hb_060980_010 Hb_060980_010 Hb_000954_010--Hb_060980_010 Hb_008948_140 Hb_008948_140 Hb_000856_300--Hb_008948_140 Hb_000926_150 Hb_000926_150 Hb_000856_300--Hb_000926_150 Hb_000580_050 Hb_000580_050 Hb_000856_300--Hb_000580_050 Hb_001008_100 Hb_001008_100 Hb_000856_300--Hb_001008_100 Hb_000856_300--Hb_000373_170 Hb_000787_200 Hb_000787_200 Hb_000856_300--Hb_000787_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2339 41.0066 42.3084 37.7681 24.0274 27.0626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0454 13.8659 6.2784 33.1438 37.1332

CAGE analysis