Hb_003121_010

Information

Type -
Description -
Location Contig3121: 43755-45664
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09720g
description POPTRDRAFT_669415; hypothetical protein
nr
ID XP_002325036.1
description hypothetical protein POPTR_0018s09720g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9ILW5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09720g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33007: 45046-45579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003121_010 0.0 - - hypothetical protein POPTR_0018s09720g [Populus trichocarpa]
2 Hb_002986_140 0.1770453198 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
3 Hb_028227_060 0.1778271594 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
4 Hb_004007_140 0.1816499325 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
5 Hb_001005_140 0.1830815438 - - conserved hypothetical protein [Ricinus communis]
6 Hb_074197_050 0.184879429 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
7 Hb_000116_320 0.185387168 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_061700_040 0.1867825336 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
9 Hb_000028_150 0.1891407784 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
10 Hb_000974_040 0.1917373697 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
11 Hb_007479_010 0.1925342076 - - Root phototropism protein, putative [Ricinus communis]
12 Hb_002495_090 0.194384393 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
13 Hb_002007_120 0.1946423915 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
14 Hb_001140_190 0.1948611591 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
15 Hb_000107_580 0.1955180717 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
16 Hb_000711_030 0.195834308 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
17 Hb_003050_140 0.1960614977 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
18 Hb_000958_060 0.1973077459 - - conserved hypothetical protein [Ricinus communis]
19 Hb_092516_010 0.1984975881 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
20 Hb_005736_120 0.1993013032 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]

Gene co-expression network

sample Hb_003121_010 Hb_003121_010 Hb_002986_140 Hb_002986_140 Hb_003121_010--Hb_002986_140 Hb_028227_060 Hb_028227_060 Hb_003121_010--Hb_028227_060 Hb_004007_140 Hb_004007_140 Hb_003121_010--Hb_004007_140 Hb_001005_140 Hb_001005_140 Hb_003121_010--Hb_001005_140 Hb_074197_050 Hb_074197_050 Hb_003121_010--Hb_074197_050 Hb_000116_320 Hb_000116_320 Hb_003121_010--Hb_000116_320 Hb_000028_150 Hb_000028_150 Hb_002986_140--Hb_000028_150 Hb_002942_120 Hb_002942_120 Hb_002986_140--Hb_002942_120 Hb_003638_040 Hb_003638_040 Hb_002986_140--Hb_003638_040 Hb_001343_120 Hb_001343_120 Hb_002986_140--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_002986_140--Hb_003992_050 Hb_000169_070 Hb_000169_070 Hb_002986_140--Hb_000169_070 Hb_000974_040 Hb_000974_040 Hb_028227_060--Hb_000974_040 Hb_002007_120 Hb_002007_120 Hb_028227_060--Hb_002007_120 Hb_000648_070 Hb_000648_070 Hb_028227_060--Hb_000648_070 Hb_004884_100 Hb_004884_100 Hb_028227_060--Hb_004884_100 Hb_000268_060 Hb_000268_060 Hb_028227_060--Hb_000268_060 Hb_137216_010 Hb_137216_010 Hb_028227_060--Hb_137216_010 Hb_001504_210 Hb_001504_210 Hb_004007_140--Hb_001504_210 Hb_001817_040 Hb_001817_040 Hb_004007_140--Hb_001817_040 Hb_000438_160 Hb_000438_160 Hb_004007_140--Hb_000438_160 Hb_001140_190 Hb_001140_190 Hb_004007_140--Hb_001140_190 Hb_000847_130 Hb_000847_130 Hb_004007_140--Hb_000847_130 Hb_001491_020 Hb_001491_020 Hb_004007_140--Hb_001491_020 Hb_001005_140--Hb_000116_320 Hb_023344_090 Hb_023344_090 Hb_001005_140--Hb_023344_090 Hb_003120_020 Hb_003120_020 Hb_001005_140--Hb_003120_020 Hb_009476_030 Hb_009476_030 Hb_001005_140--Hb_009476_030 Hb_017434_040 Hb_017434_040 Hb_001005_140--Hb_017434_040 Hb_000808_130 Hb_000808_130 Hb_001005_140--Hb_000808_130 Hb_061700_040 Hb_061700_040 Hb_074197_050--Hb_061700_040 Hb_000084_210 Hb_000084_210 Hb_074197_050--Hb_000084_210 Hb_027380_070 Hb_027380_070 Hb_074197_050--Hb_027380_070 Hb_000107_580 Hb_000107_580 Hb_074197_050--Hb_000107_580 Hb_005365_040 Hb_005365_040 Hb_074197_050--Hb_005365_040 Hb_048141_050 Hb_048141_050 Hb_074197_050--Hb_048141_050 Hb_000116_320--Hb_023344_090 Hb_000116_320--Hb_003120_020 Hb_000116_320--Hb_000808_130 Hb_000915_210 Hb_000915_210 Hb_000116_320--Hb_000915_210 Hb_001675_090 Hb_001675_090 Hb_000116_320--Hb_001675_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.281799 0.1922 5.86591 1.60668 0.0461569 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.041456 0.685292 0.116791 3.46913

CAGE analysis