Hb_027380_070

Information

Type -
Description -
Location Contig27380: 40857-41102
Sequence    

Annotation

kegg
ID rcu:RCOM_0596950
description hypothetical protein
nr
ID XP_002525960.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIZ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0596950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28594: 40769-41378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_030565_020 0.0963880937 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
3 Hb_011512_100 0.1028631889 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
4 Hb_002253_020 0.1033622887 - - PREDICTED: callose synthase 5 [Jatropha curcas]
5 Hb_002259_020 0.1036883794 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
6 Hb_011716_140 0.1053404421 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
7 Hb_004627_050 0.1108311373 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
8 Hb_004223_120 0.1136233625 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
9 Hb_000979_210 0.1142644075 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002078_280 0.1144498567 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
11 Hb_001033_080 0.1157029586 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
12 Hb_005357_210 0.1193012075 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
13 Hb_025048_050 0.1205691251 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
14 Hb_000847_040 0.120652944 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
15 Hb_000187_100 0.1219789302 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_002028_070 0.1229366045 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
17 Hb_001946_070 0.1233803898 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_006261_020 0.1249760941 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
19 Hb_002006_080 0.1250957377 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
20 Hb_000334_020 0.1252826698 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_027380_070 Hb_027380_070 Hb_030565_020 Hb_030565_020 Hb_027380_070--Hb_030565_020 Hb_011512_100 Hb_011512_100 Hb_027380_070--Hb_011512_100 Hb_002253_020 Hb_002253_020 Hb_027380_070--Hb_002253_020 Hb_002259_020 Hb_002259_020 Hb_027380_070--Hb_002259_020 Hb_011716_140 Hb_011716_140 Hb_027380_070--Hb_011716_140 Hb_004627_050 Hb_004627_050 Hb_027380_070--Hb_004627_050 Hb_030565_020--Hb_011716_140 Hb_030565_020--Hb_002253_020 Hb_030565_020--Hb_011512_100 Hb_030565_020--Hb_002259_020 Hb_004223_120 Hb_004223_120 Hb_030565_020--Hb_004223_120 Hb_002078_280 Hb_002078_280 Hb_030565_020--Hb_002078_280 Hb_011512_100--Hb_004627_050 Hb_011512_100--Hb_002259_020 Hb_011512_100--Hb_002078_280 Hb_011512_100--Hb_011716_140 Hb_000979_210 Hb_000979_210 Hb_011512_100--Hb_000979_210 Hb_002253_020--Hb_011716_140 Hb_000334_020 Hb_000334_020 Hb_002253_020--Hb_000334_020 Hb_006261_020 Hb_006261_020 Hb_002253_020--Hb_006261_020 Hb_004235_070 Hb_004235_070 Hb_002253_020--Hb_004235_070 Hb_001033_080 Hb_001033_080 Hb_002253_020--Hb_001033_080 Hb_002259_020--Hb_004627_050 Hb_002259_020--Hb_004223_120 Hb_002259_020--Hb_002078_280 Hb_000847_040 Hb_000847_040 Hb_002259_020--Hb_000847_040 Hb_011716_140--Hb_002078_280 Hb_011716_140--Hb_004627_050 Hb_011716_140--Hb_002259_020 Hb_004627_050--Hb_002078_280 Hb_000172_660 Hb_000172_660 Hb_004627_050--Hb_000172_660 Hb_002245_050 Hb_002245_050 Hb_004627_050--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_004627_050--Hb_002929_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.395181 27.4282 2.54515 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.658869 0 11.2667

CAGE analysis