Hb_061700_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig61700: 25749-28334
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00890g
description POPTRDRAFT_773580; hypothetical protein
nr
ID XP_002318943.2
description hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID B9I6Q3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00890g PE=4 SV=2
Gene Ontology
ID GO:0032550
description probable disease resistance protein at1g12280

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51307: 27149-27454 , PASA_asmbl_51309: 27883-28547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061700_040 0.0 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
2 Hb_074197_050 0.1000826725 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
3 Hb_004346_050 0.1184440207 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
4 Hb_048141_050 0.1242858637 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
5 Hb_000087_040 0.1246402049 - - Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]
6 Hb_016371_010 0.1257649989 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
7 Hb_179129_010 0.1294242234 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
8 Hb_000294_020 0.1347618433 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
9 Hb_000928_100 0.1349127916 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_078954_030 0.1356240162 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000483_470 0.137078668 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_060534_010 0.1373270813 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
13 Hb_000313_250 0.1382796159 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
14 Hb_000025_700 0.1393310331 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
15 Hb_000413_190 0.1417345087 - - PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Pyrus x bretschneideri]
16 Hb_000236_130 0.1417831051 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
17 Hb_002007_120 0.1420065247 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
18 Hb_022167_010 0.1420620261 - - Kinase, putative isoform 2 [Theobroma cacao]
19 Hb_002027_100 0.1422345656 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004411_010 0.1427106994 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]

Gene co-expression network

sample Hb_061700_040 Hb_061700_040 Hb_074197_050 Hb_074197_050 Hb_061700_040--Hb_074197_050 Hb_004346_050 Hb_004346_050 Hb_061700_040--Hb_004346_050 Hb_048141_050 Hb_048141_050 Hb_061700_040--Hb_048141_050 Hb_000087_040 Hb_000087_040 Hb_061700_040--Hb_000087_040 Hb_016371_010 Hb_016371_010 Hb_061700_040--Hb_016371_010 Hb_179129_010 Hb_179129_010 Hb_061700_040--Hb_179129_010 Hb_000084_210 Hb_000084_210 Hb_074197_050--Hb_000084_210 Hb_027380_070 Hb_027380_070 Hb_074197_050--Hb_027380_070 Hb_000107_580 Hb_000107_580 Hb_074197_050--Hb_000107_580 Hb_005365_040 Hb_005365_040 Hb_074197_050--Hb_005365_040 Hb_074197_050--Hb_048141_050 Hb_004346_050--Hb_179129_010 Hb_004346_050--Hb_016371_010 Hb_078954_030 Hb_078954_030 Hb_004346_050--Hb_078954_030 Hb_000025_700 Hb_000025_700 Hb_004346_050--Hb_000025_700 Hb_001424_010 Hb_001424_010 Hb_004346_050--Hb_001424_010 Hb_004346_050--Hb_048141_050 Hb_048141_050--Hb_016371_010 Hb_048141_050--Hb_179129_010 Hb_004411_010 Hb_004411_010 Hb_048141_050--Hb_004411_010 Hb_048141_050--Hb_078954_030 Hb_048141_050--Hb_000087_040 Hb_000087_040--Hb_016371_010 Hb_000087_040--Hb_004411_010 Hb_000087_040--Hb_004346_050 Hb_000005_060 Hb_000005_060 Hb_000087_040--Hb_000005_060 Hb_000087_040--Hb_179129_010 Hb_016371_010--Hb_179129_010 Hb_016371_010--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_016371_010--Hb_000697_030 Hb_016371_010--Hb_078954_030 Hb_016371_010--Hb_004411_010 Hb_179129_010--Hb_078954_030 Hb_179129_010--Hb_001424_010 Hb_179129_010--Hb_000025_700 Hb_000530_040 Hb_000530_040 Hb_179129_010--Hb_000530_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00929296 0.173266 1.25807 0.292546 0 0.00656018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0511362 0 0.74127

CAGE analysis