Hb_002316_070

Information

Type -
Description -
Location Contig2316: 46480-51434
Sequence    

Annotation

kegg
ID vvi:100268118
description 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial
nr
ID XP_012080103.1
description PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial [Jatropha curcas]
swissprot
ID Q0A5W2
description 8-amino-7-oxononanoate synthase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=bioF PE=3 SV=1
trembl
ID A0A067K7Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11504 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 2-amino-3-ketobutyrate coenzyme a mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24364: 46493-51396 , PASA_asmbl_24365: 47296-47796 , PASA_asmbl_24366: 52181-52474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_070 0.0 - - PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial [Jatropha curcas]
2 Hb_000002_120 0.1149177925 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
3 Hb_000371_010 0.1167964245 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
4 Hb_002374_230 0.1226944475 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
5 Hb_003159_140 0.1326865797 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000082_010 0.1331429498 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
7 Hb_001662_040 0.1357361662 - - DNA helicase, putative [Ricinus communis]
8 Hb_003943_050 0.1368449984 - - phosphoglucomutase, putative [Ricinus communis]
9 Hb_029388_010 0.1376107697 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
10 Hb_005975_010 0.1388913879 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
11 Hb_000556_190 0.1398902688 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
12 Hb_001089_070 0.1409988029 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
13 Hb_016777_040 0.1410508563 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
14 Hb_034243_040 0.1419828261 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
15 Hb_000152_790 0.1422930903 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
16 Hb_006501_050 0.1427196612 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
17 Hb_002471_240 0.1429764355 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
18 Hb_001186_090 0.1440185556 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
19 Hb_005542_130 0.1447695301 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
20 Hb_001348_170 0.1459535636 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002316_070 Hb_002316_070 Hb_000002_120 Hb_000002_120 Hb_002316_070--Hb_000002_120 Hb_000371_010 Hb_000371_010 Hb_002316_070--Hb_000371_010 Hb_002374_230 Hb_002374_230 Hb_002316_070--Hb_002374_230 Hb_003159_140 Hb_003159_140 Hb_002316_070--Hb_003159_140 Hb_000082_010 Hb_000082_010 Hb_002316_070--Hb_000082_010 Hb_001662_040 Hb_001662_040 Hb_002316_070--Hb_001662_040 Hb_005975_010 Hb_005975_010 Hb_000002_120--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_000002_120--Hb_003579_050 Hb_000002_120--Hb_000371_010 Hb_000002_120--Hb_001662_040 Hb_034243_040 Hb_034243_040 Hb_000002_120--Hb_034243_040 Hb_000098_140 Hb_000098_140 Hb_000002_120--Hb_000098_140 Hb_128548_010 Hb_128548_010 Hb_000371_010--Hb_128548_010 Hb_000224_150 Hb_000224_150 Hb_000371_010--Hb_000224_150 Hb_002326_110 Hb_002326_110 Hb_000371_010--Hb_002326_110 Hb_033642_040 Hb_033642_040 Hb_000371_010--Hb_033642_040 Hb_002311_310 Hb_002311_310 Hb_000371_010--Hb_002311_310 Hb_003093_040 Hb_003093_040 Hb_002374_230--Hb_003093_040 Hb_002374_230--Hb_003159_140 Hb_005542_130 Hb_005542_130 Hb_002374_230--Hb_005542_130 Hb_000175_410 Hb_000175_410 Hb_002374_230--Hb_000175_410 Hb_030414_040 Hb_030414_040 Hb_002374_230--Hb_030414_040 Hb_001158_160 Hb_001158_160 Hb_002374_230--Hb_001158_160 Hb_001040_100 Hb_001040_100 Hb_003159_140--Hb_001040_100 Hb_000329_800 Hb_000329_800 Hb_003159_140--Hb_000329_800 Hb_003159_140--Hb_005542_130 Hb_002889_010 Hb_002889_010 Hb_003159_140--Hb_002889_010 Hb_001153_210 Hb_001153_210 Hb_003159_140--Hb_001153_210 Hb_000035_470 Hb_000035_470 Hb_003159_140--Hb_000035_470 Hb_016777_040 Hb_016777_040 Hb_000082_010--Hb_016777_040 Hb_002471_240 Hb_002471_240 Hb_000082_010--Hb_002471_240 Hb_000373_080 Hb_000373_080 Hb_000082_010--Hb_000373_080 Hb_006501_010 Hb_006501_010 Hb_000082_010--Hb_006501_010 Hb_028872_070 Hb_028872_070 Hb_000082_010--Hb_028872_070 Hb_008114_040 Hb_008114_040 Hb_000082_010--Hb_008114_040 Hb_163591_010 Hb_163591_010 Hb_001662_040--Hb_163591_010 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_002067_030 Hb_002067_030 Hb_001662_040--Hb_002067_030 Hb_001662_040--Hb_000371_010 Hb_001662_040--Hb_000098_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1221 5.77604 26.9026 6.93313 9.69215 11.5215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0906 5.73769 4.36946 18.7569 8.60337

CAGE analysis