Hb_002157_030

Information

Type -
Description -
Location Contig2157: 11958-20625
Sequence    

Annotation

kegg
ID rcu:RCOM_1183380
description hypothetical protein
nr
ID XP_002527938.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q99JH1
description Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1
trembl
ID B9SPL9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1183380 PE=4 SV=1
Gene Ontology
ID GO:0003676
description h aca ribonucleoprotein complex subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001723_060 0.1705010033 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
3 Hb_001227_090 0.1746227744 - - peroxiredoxin, putative [Ricinus communis]
4 Hb_004123_020 0.1763426771 - - amino acid binding protein, putative [Ricinus communis]
5 Hb_001863_020 0.1829996266 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
6 Hb_185735_010 0.1841560321 - - Heat shock factor protein HSF8, putative [Ricinus communis]
7 Hb_046823_010 0.1845643919 - - hypothetical protein CICLE_v100021301mg, partial [Citrus clementina]
8 Hb_009455_020 0.1898239774 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
9 Hb_000120_640 0.192339229 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000529_180 0.1923932733 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
11 Hb_139848_010 0.1942659696 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
12 Hb_000340_100 0.1961645365 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
13 Hb_001138_060 0.1965929346 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
14 Hb_171215_010 0.1976547006 - - vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_003038_160 0.1987994074 - - auxilin, putative [Ricinus communis]
16 Hb_002675_250 0.1990349729 - - aspartate aminotransferase, putative [Ricinus communis]
17 Hb_001014_060 0.1992350312 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
18 Hb_001541_070 0.199447754 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
19 Hb_001195_450 0.2019832169 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
20 Hb_000167_110 0.2021446573 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002157_030 Hb_002157_030 Hb_001723_060 Hb_001723_060 Hb_002157_030--Hb_001723_060 Hb_001227_090 Hb_001227_090 Hb_002157_030--Hb_001227_090 Hb_004123_020 Hb_004123_020 Hb_002157_030--Hb_004123_020 Hb_001863_020 Hb_001863_020 Hb_002157_030--Hb_001863_020 Hb_185735_010 Hb_185735_010 Hb_002157_030--Hb_185735_010 Hb_046823_010 Hb_046823_010 Hb_002157_030--Hb_046823_010 Hb_001195_450 Hb_001195_450 Hb_001723_060--Hb_001195_450 Hb_002762_110 Hb_002762_110 Hb_001723_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001723_060--Hb_009778_060 Hb_001138_060 Hb_001138_060 Hb_001723_060--Hb_001138_060 Hb_001214_050 Hb_001214_050 Hb_001723_060--Hb_001214_050 Hb_000482_040 Hb_000482_040 Hb_001723_060--Hb_000482_040 Hb_001227_090--Hb_001195_450 Hb_012150_030 Hb_012150_030 Hb_001227_090--Hb_012150_030 Hb_000941_100 Hb_000941_100 Hb_001227_090--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_001227_090--Hb_003053_110 Hb_001629_090 Hb_001629_090 Hb_001227_090--Hb_001629_090 Hb_000529_180 Hb_000529_180 Hb_001227_090--Hb_000529_180 Hb_000189_570 Hb_000189_570 Hb_004123_020--Hb_000189_570 Hb_002045_060 Hb_002045_060 Hb_004123_020--Hb_002045_060 Hb_007904_230 Hb_007904_230 Hb_004123_020--Hb_007904_230 Hb_011609_090 Hb_011609_090 Hb_004123_020--Hb_011609_090 Hb_005276_040 Hb_005276_040 Hb_004123_020--Hb_005276_040 Hb_000364_050 Hb_000364_050 Hb_004123_020--Hb_000364_050 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_001399_010 Hb_001399_010 Hb_001863_020--Hb_001399_010 Hb_000525_050 Hb_000525_050 Hb_001863_020--Hb_000525_050 Hb_042202_060 Hb_042202_060 Hb_001863_020--Hb_042202_060 Hb_005167_020 Hb_005167_020 Hb_001863_020--Hb_005167_020 Hb_001473_040 Hb_001473_040 Hb_185735_010--Hb_001473_040 Hb_001541_070 Hb_001541_070 Hb_185735_010--Hb_001541_070 Hb_001214_180 Hb_001214_180 Hb_185735_010--Hb_001214_180 Hb_001604_150 Hb_001604_150 Hb_185735_010--Hb_001604_150 Hb_183612_070 Hb_183612_070 Hb_185735_010--Hb_183612_070 Hb_007416_110 Hb_007416_110 Hb_046823_010--Hb_007416_110 Hb_000049_110 Hb_000049_110 Hb_046823_010--Hb_000049_110 Hb_046823_010--Hb_000525_050 Hb_003531_070 Hb_003531_070 Hb_046823_010--Hb_003531_070 Hb_003040_030 Hb_003040_030 Hb_046823_010--Hb_003040_030 Hb_000139_340 Hb_000139_340 Hb_046823_010--Hb_000139_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7924 1.28182 2.63361 1.15479 0.392175 0.0235281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47438 1.23693 2.49416 1.94193 3.8023

CAGE analysis