Hb_001421_050

Information

Type -
Description -
Location Contig1421: 101847-102664
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11253: 103588-103783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001421_050 0.0 - - -
2 Hb_026527_040 0.259454149 - - conserved hypothetical protein [Ricinus communis]
3 Hb_129105_010 0.2999935417 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
4 Hb_004112_060 0.3130932094 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
5 Hb_002173_010 0.3139251581 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_164255_010 0.3163890471 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
7 Hb_001005_160 0.331143115 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011609_040 0.3312136691 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
9 Hb_000733_100 0.3342057668 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006925_090 0.3354366017 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
11 Hb_000808_120 0.3359378527 - - -
12 Hb_000111_400 0.343009044 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
13 Hb_009620_090 0.3477095142 - - hypothetical protein L484_000980 [Morus notabilis]
14 Hb_002391_090 0.3497088683 - - PREDICTED: IST1-like protein [Jatropha curcas]
15 Hb_000599_220 0.3525378658 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
16 Hb_001329_170 0.3529903209 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
17 Hb_010488_040 0.357476436 - - PREDICTED: phosphomannomutase [Populus euphratica]
18 Hb_002048_030 0.3614938732 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
19 Hb_000926_230 0.361894471 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001214_150 0.3634239399 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]

Gene co-expression network

sample Hb_001421_050 Hb_001421_050 Hb_026527_040 Hb_026527_040 Hb_001421_050--Hb_026527_040 Hb_129105_010 Hb_129105_010 Hb_001421_050--Hb_129105_010 Hb_004112_060 Hb_004112_060 Hb_001421_050--Hb_004112_060 Hb_002173_010 Hb_002173_010 Hb_001421_050--Hb_002173_010 Hb_164255_010 Hb_164255_010 Hb_001421_050--Hb_164255_010 Hb_001005_160 Hb_001005_160 Hb_001421_050--Hb_001005_160 Hb_000111_400 Hb_000111_400 Hb_026527_040--Hb_000111_400 Hb_006925_090 Hb_006925_090 Hb_026527_040--Hb_006925_090 Hb_034904_010 Hb_034904_010 Hb_026527_040--Hb_034904_010 Hb_011972_010 Hb_011972_010 Hb_026527_040--Hb_011972_010 Hb_011505_010 Hb_011505_010 Hb_026527_040--Hb_011505_010 Hb_004453_190 Hb_004453_190 Hb_129105_010--Hb_004453_190 Hb_129105_010--Hb_004112_060 Hb_002984_020 Hb_002984_020 Hb_129105_010--Hb_002984_020 Hb_000733_100 Hb_000733_100 Hb_129105_010--Hb_000733_100 Hb_000599_220 Hb_000599_220 Hb_129105_010--Hb_000599_220 Hb_185506_010 Hb_185506_010 Hb_129105_010--Hb_185506_010 Hb_001459_040 Hb_001459_040 Hb_004112_060--Hb_001459_040 Hb_000808_120 Hb_000808_120 Hb_004112_060--Hb_000808_120 Hb_002243_050 Hb_002243_050 Hb_004112_060--Hb_002243_050 Hb_053073_010 Hb_053073_010 Hb_004112_060--Hb_053073_010 Hb_001514_250 Hb_001514_250 Hb_004112_060--Hb_001514_250 Hb_071781_010 Hb_071781_010 Hb_004112_060--Hb_071781_010 Hb_006120_080 Hb_006120_080 Hb_002173_010--Hb_006120_080 Hb_000717_040 Hb_000717_040 Hb_002173_010--Hb_000717_040 Hb_006018_050 Hb_006018_050 Hb_002173_010--Hb_006018_050 Hb_178793_010 Hb_178793_010 Hb_002173_010--Hb_178793_010 Hb_001953_140 Hb_001953_140 Hb_002173_010--Hb_001953_140 Hb_000072_190 Hb_000072_190 Hb_002173_010--Hb_000072_190 Hb_010068_100 Hb_010068_100 Hb_164255_010--Hb_010068_100 Hb_001269_290 Hb_001269_290 Hb_164255_010--Hb_001269_290 Hb_074836_010 Hb_074836_010 Hb_164255_010--Hb_074836_010 Hb_001545_050 Hb_001545_050 Hb_164255_010--Hb_001545_050 Hb_082407_010 Hb_082407_010 Hb_164255_010--Hb_082407_010 Hb_000926_230 Hb_000926_230 Hb_164255_010--Hb_000926_230 Hb_007894_210 Hb_007894_210 Hb_001005_160--Hb_007894_210 Hb_010488_040 Hb_010488_040 Hb_001005_160--Hb_010488_040 Hb_000438_090 Hb_000438_090 Hb_001005_160--Hb_000438_090 Hb_001005_160--Hb_000926_230 Hb_001005_160--Hb_001545_050 Hb_002411_080 Hb_002411_080 Hb_001005_160--Hb_002411_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0989376 0.230527 0.15791 0.0935106 0.0844272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.172201 0 0 0

CAGE analysis