Hb_001205_190

Information

Type -
Description -
Location Contig1205: 130597-133801
Sequence    

Annotation

kegg
ID rcu:RCOM_0536140
description somatic embryogenesis receptor kinase, putative (EC:2.7.11.16)
nr
ID XP_002521577.1
description somatic embryogenesis receptor kinase, putative [Ricinus communis]
swissprot
ID Q9ZNQ8
description Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1
trembl
ID B9S6F8
description Somatic embryogenesis receptor kinase, putative OS=Ricinus communis GN=RCOM_0536140 PE=3 SV=1
Gene Ontology
ID GO:0005622
description proline-rich receptor-like protein kinase perk4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06344: 131838-132660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_190 0.0 - - somatic embryogenesis receptor kinase, putative [Ricinus communis]
2 Hb_005542_030 0.1589198034 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
3 Hb_164926_050 0.1613173106 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
4 Hb_001019_160 0.1770891767 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006528_020 0.1777135709 - - conserved hypothetical protein [Ricinus communis]
6 Hb_033053_010 0.1781201033 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_003964_010 0.1781853659 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
8 Hb_001776_100 0.1793646288 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
9 Hb_002078_250 0.1793947271 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000529_040 0.1854703718 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
11 Hb_005649_010 0.1856425035 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
12 Hb_004678_030 0.1868044004 - - fructokinase [Manihot esculenta]
13 Hb_007747_160 0.1868313888 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
14 Hb_002235_370 0.1881438236 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
15 Hb_010315_100 0.1888361794 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
16 Hb_001318_110 0.1902887385 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
17 Hb_000009_150 0.1918868959 - - carbohydrate transporter, putative [Ricinus communis]
18 Hb_000438_010 0.1936098717 - - -
19 Hb_007192_050 0.1936898279 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
20 Hb_001141_210 0.1956394975 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]

Gene co-expression network

sample Hb_001205_190 Hb_001205_190 Hb_005542_030 Hb_005542_030 Hb_001205_190--Hb_005542_030 Hb_164926_050 Hb_164926_050 Hb_001205_190--Hb_164926_050 Hb_001019_160 Hb_001019_160 Hb_001205_190--Hb_001019_160 Hb_006528_020 Hb_006528_020 Hb_001205_190--Hb_006528_020 Hb_033053_010 Hb_033053_010 Hb_001205_190--Hb_033053_010 Hb_003964_010 Hb_003964_010 Hb_001205_190--Hb_003964_010 Hb_005542_030--Hb_006528_020 Hb_043987_010 Hb_043987_010 Hb_005542_030--Hb_043987_010 Hb_000163_180 Hb_000163_180 Hb_005542_030--Hb_000163_180 Hb_000152_170 Hb_000152_170 Hb_005542_030--Hb_000152_170 Hb_002361_010 Hb_002361_010 Hb_005542_030--Hb_002361_010 Hb_000482_070 Hb_000482_070 Hb_005542_030--Hb_000482_070 Hb_164926_050--Hb_033053_010 Hb_000069_430 Hb_000069_430 Hb_164926_050--Hb_000069_430 Hb_002078_250 Hb_002078_250 Hb_164926_050--Hb_002078_250 Hb_007574_050 Hb_007574_050 Hb_164926_050--Hb_007574_050 Hb_005000_050 Hb_005000_050 Hb_164926_050--Hb_005000_050 Hb_002235_370 Hb_002235_370 Hb_164926_050--Hb_002235_370 Hb_003687_040 Hb_003687_040 Hb_001019_160--Hb_003687_040 Hb_000834_220 Hb_000834_220 Hb_001019_160--Hb_000834_220 Hb_000230_360 Hb_000230_360 Hb_001019_160--Hb_000230_360 Hb_031385_010 Hb_031385_010 Hb_001019_160--Hb_031385_010 Hb_001440_010 Hb_001440_010 Hb_001019_160--Hb_001440_010 Hb_000061_310 Hb_000061_310 Hb_001019_160--Hb_000061_310 Hb_001776_100 Hb_001776_100 Hb_006528_020--Hb_001776_100 Hb_000731_210 Hb_000731_210 Hb_006528_020--Hb_000731_210 Hb_002301_370 Hb_002301_370 Hb_006528_020--Hb_002301_370 Hb_004678_030 Hb_004678_030 Hb_006528_020--Hb_004678_030 Hb_000318_170 Hb_000318_170 Hb_006528_020--Hb_000318_170 Hb_046109_010 Hb_046109_010 Hb_033053_010--Hb_046109_010 Hb_033053_010--Hb_007574_050 Hb_007904_290 Hb_007904_290 Hb_033053_010--Hb_007904_290 Hb_012272_010 Hb_012272_010 Hb_033053_010--Hb_012272_010 Hb_000340_560 Hb_000340_560 Hb_033053_010--Hb_000340_560 Hb_003964_010--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003964_010--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_003964_010--Hb_002324_050 Hb_005649_010 Hb_005649_010 Hb_003964_010--Hb_005649_010 Hb_064985_010 Hb_064985_010 Hb_003964_010--Hb_064985_010 Hb_002343_020 Hb_002343_020 Hb_003964_010--Hb_002343_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0136224 0.264972 0.401466 0.305992 0.0439764 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0249638 0.039283 0 0.218999 0.082786

CAGE analysis